Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02879 ATGTCTCTCATTAGAGTTTTTCGTTCTCGTAAGTTCTCCAGATCGTTTAGGGGAACTGGTGCTCTGGATGAGGACGACCGGAGGAACGGGATCGGTGGAGGCGATGGGGCTGAGGCCGGTGAGGACCCGGCGTACGGCAATGGGTGGTCCACCATGCTGCCGGAGCTTCTCGGAGAGATCATACGGCGGATGGAGGTCAGCGAGGAGCGGTGGCCCAACCGCCAGAACGTTGTCGCTTGTGCGGGTGTCTGTAAGAGGTGGAGGGAGATGACGCGTGAGATCGTACGGTCCCCTTCTCAGAGCAGCAAAATTACTTTCCCTTCTTGCCTTAAAGAGCCAGGACCACGTGATTCACCTTACCAGTGTCTTATTAAGCGAAACAAGAGGACTTCAACATTTTACCTATATCTTGCCCTTACGCCATCATTCACAGATAAAGGGAAGTTTCTCTTGGCAGCTAGGAGATATCGGCGTGGTGCTAATACCGAATATATCATATCACTTGATGCTGAAGACTTTTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACTATCTATGACAGCAAGCCACCCCATAATGGTGCGAAGCCATCAAGCTGCAGGGCAAGCCGAAGATTTACGAGCAAGCAGATATGCCCACAGGTTCCTGCAGGTAACTTTGAGGTGGGACATGTCTCATACAAGTTCAACATTTTGAAATCGAGGGGGCCAAGAAGGATGGCTTGCACAATGAAGTGCCCCTTTCCTCTTCCAGGAGAAAGCTCAGATAACAAAAATCTTGATGCCGCGGATAAGACAAACGATAAAGAACATGTTGTCGCTTCTGGCTACTCAATGTTGAAGAACAAAGCCCCAAGATGGCATGAACATTTGCAGTGTTGGTGCCTGAATTTCCATGGTCGTGTGACCGTTGCGTCAGTGAAAAATTTTCAGCTGGTTGCCACAGTGGATCAGAGCCAACCAGGCGGAAAAGGAGATGAGGAAACAGTTCTCCTGCAGTTTGGGAAGGTTGCGGATGATACCTTCACCATGGATTATAGGCAGCCCTTATCAGCCTTCCAGGCTTTTGCTATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTGA 1143 0.4943 MSLIRVFRSRKFSRSFRGTGALDEDDRRNGIGGGDGAEAGEDPAYGNGWSTMLPELLGEIIRRMEVSEERWPNRQNVVACAGVCKRWREMTREIVRSPSQSSKITFPSCLKEPGPRDSPYQCLIKRNKRTSTFYLYLALTPSFTDKGKFLLAARRYRRGANTEYIISLDAEDFSQGSNAYVGKLSSDFLGTNFTIYDSKPPHNGAKPSSCRASRRFTSKQICPQVPAGNFEVGHVSYKFNILKSRGPRRMACTMKCPFPLPGESSDNKNLDAADKTNDKEHVVASGYSMLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02879 380 Pfam F-box domain 54 96 IPR001810 GO:0005515
Accr1g02879 380 ProSitePatterns Tub family signature 2. 365 380 IPR018066 -
Accr1g02879 380 SUPERFAMILY Tubby C-terminal domain-like 98 380 IPR025659 -
Accr1g02879 380 Pfam Tub family 110 375 IPR000007 -
Accr1g02879 380 ProSitePatterns Tub family signature 1. 308 321 IPR018066 -
Accr1g02879 380 MobiDBLite consensus disorder prediction 19 45 - -
Accr1g02879 380 CDD F-box_AtTLP-like 49 93 - -
Accr1g02879 380 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Accr1g02879 380 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Accr1g02879 380 PRINTS Tubby superfamily signature 308 324 IPR000007 -
Accr1g02879 380 PRINTS Tubby superfamily signature 358 380 IPR000007 -
Accr1g02879 380 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Accr1g02879 380 PRINTS Tubby superfamily signature 290 307 IPR000007 -
Accr1g02879 380 PRINTS Tubby superfamily signature 337 356 IPR000007 -
Accr1g02879 380 Gene3D Tubby Protein; Chain A 105 380 IPR025659 -
Accr1g02879 380 PANTHER TUBBY-RELATED 34 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02879 Accr-Chr1 65770129 65773470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02879 1 380 TUB Transcription Factor Family AT1G53320 70.909 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr1g02879 Tub 6.1e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02879 K19600 - qsa:O6P43_029189 606.29