LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g02857	ATGAAGTACCGCACGAGTTGTCCTCAATATTATTGCCTTGTTGTGCTCCTTCTCTTTTGCTTCTTCTCAACTTCTGCCCTCGGAGTCACTTCACCAGACGAAGTGGAATCTTTGAGAAAGATAGCTGCGAAACTGGGCAAGAAGACGGACTGGGACTTCAATTATGATCCATGTATTACCAGTGGAACTCATAATTGGACTAAAGACGACCAGAATAATGCTCTCATCTGCAATTGTACTGTTGGTGGTGATGGTTTTTGTCATGTTACTGGCATTCGACTGAAATCACAAAACCTGGCGGGGATTCTGCCGACAGAACTGACAGAGCTACATTACCTTACAGAAATTGACCTCGCTCTCAATTACCTCAACGGCACAATCCCTCCAGAATGGGGCTCCACTCAACTAACTATTCTTTCTGTTTTTGCGAATCGGCTGACGGGTACAATCCCCCGAGAGCTAGGAAACATTTCCACTCTCCAGAGTCTGGACTTGGCGGTCAATCAATTTTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTCACCAAGATTGAAAGATTGCTACTTAACTCCAATAATTTTACCGGAGAATTACCTCCTACATTAGCCAAGCTCACTGCATTGCGACAATTTGCAATTGGAGACAACCAATTTTACGGGAAGATGCCTGATTTTATTCAGAACTGGACAAGTCTTGAAAAAATGTGGATTCTAGGGAGTGGTTTAAGTGGGCCAATTCCTCCTGCAATATTCTCTCTTATGAAAAATCTAATTGAGTTGATAATTAGTGACCTGAAAGGATCTGAATATTTGCCTTTGCCGCATCTTAATGACACGAGAAATTTGAAAATTCTGACATTGAGGAATTGCAGTATAAATGGAACAATACCTGGATATCTGGGGACTATGACCAATTTCAACAAAATAGATCTTAGCTTCAACCAGTTGACGGGAGGTATTCCAAGCACCTTTAAAAACCTATGGAGACGTGATATATTTTTCACAGGAAACCTTCTCACTGAATCAATACCTTCATGGATAGATGCAAAGGAGGCCAACGGTGACATAGATCTCTCATACAATAACTTCAACAACTCACAGGAGCACACATGTTCAAAAACTAATGTGAACCTCTTTGCAAGCTCGTCAATGGGCAATAACTCAGGAATGCCCATGTGTCTAAGAAGCAATAGCTGTCTTGAGAAATCGCGCTCTCTATATATAAATTGTGGTGGAGATTCGGTAATCTACAATGAAGGTATAAAATATGAAGGTGATGCAGATAAAGCTGGACCGGCTAGATTCTACTACGGTGGTGGAAAATGGGCATTTAGCACCACTGGCTATTACATGGATAATGATACTGAATACTATACCTGTTCAAACCAGTCTAGGCTTTCTATGACCGACGACGATGCTAAACTGTATATGAATGCCCGTGTTACTCCTATTTCTCTGACTTATTATGGGTTTTGCCTTGAAAATGGAAGATACAGACTGAAACTTCATTTTGCTGAGATCATGTTCACTGATGATCAAACATATAGCAGCCTTGGAAGGCGTTTATTTGACATCTACATTCAGGGAGAGAAGGTGCTAGAAAACTTCAACATTGCTGAACGAGCAGGAGGAGTAGGGAAGGCGATAATAGAACCATTCACTACTGATGTCTCTAATAATAGCTTGGAGATTAGATTCTATTGGGCTGGAAAAGGGACAACTGCTATCCCATTTAAATCAGTATACGGTCCTCTTATATCTGCTATCTCCGTGGAATACATACCAGAAAATGGAATATCTGCTGGAGCTGTCGCAGGAATTGTGGTTGCAGTAGCTGTTATTGTGATCTTGGTATTTGGTATACTCTGGTGGAGAGGCTGTATAGGACACAGAAGTTCATTGGCTAAAGATCTTCAGGGTTTGGATCTTAGAACTGGTATATTCACCTTCAAGGAAATCAAAGCAGCAACCAACAACTTTAATATAGCTAATAAAATCGGAGAAGGAGGGTTTGGTCCTGTTTATAAGGGTACCCTCCCAAATGGCACAATAATTGCAGTTAAGCAGCTATCTGCCAAATCAAAGCAAGGGAACCGTGAATTTGTTAATGAAATAGGCATGATTTCAGCTTTGCAGCATCCCTATCTTGTTAAGCTCTATGGCTGTTGTGTTGAAGGTGATCAATTGTTGTTGATATATGAGTTCATGGAGAACAATAGTCTTGCAAGTGCCTTATTTGGTTCAAAAGAATTGGGATTAAAATTAGATTGGCCAATAAGACACAAGATTTGTGTTGGGATCGCTAGTGGTTTGGCATACCTCCATGAAGAATCAAGATTGAAGATTGTCCATAGAGACATTAAGGCTACTAATGTGCTACTTGATAAAGATTTGAACCCCAAGATATCAGATTTTGGTTTGGCCAAGCTTGTTGAAGAGGACAATACGCACATAAGCACTCGAATTGCTGGCACTTATGGATATATGGCACCTGAATATGCAATGCATGGTTATTTAACTGACAAAGCAGACATCTATAGTTTTGGAATTGTTGCCTTGGAAATTGTGAGTGGAAGGGTCAACACCATTCACCGGGCAAAGGAGGAAGCAATCTATCTTCTTGACTGGGCACGTATCTTGAAAGAAAAAGGAGAATTACTAGAGCTAGTTGATCCGAGGTTGGGCTCAAACTTTGACAAGGAGCAAGTAATGGTGATGGTCCAAGTGGCTCTCCTATGTACCAATATAACCCCAGCAGTGAGGCCTACCATGTCTTCAGTGGTGAGCATGCTTGAAGGTAAAAGAGTGGTTGAGGAAATAGTTTCAGAGTCAAGTGAGGCATTGGATGAGAAGAAGTTGGAGGTAATAAGGACGTTATACAAACAGACGGAAGAAAGAAATAATATAACTGAGGTTCAACAAGGTACATCAGTGGACGAACTGTTTGCTGCTTCATCAACGTCAGCATCGGATCTCTACCCTCTTCATTTGGACTCCTCTTACTGGGATAAAAGATAA	3018	0.4112	MKYRTSCPQYYCLVVLLLFCFFSTSALGVTSPDEVESLRKIAAKLGKKTDWDFNYDPCITSGTHNWTKDDQNNALICNCTVGGDGFCHVTGIRLKSQNLAGILPTELTELHYLTEIDLALNYLNGTIPPEWGSTQLTILSVFANRLTGTIPRELGNISTLQSLDLAVNQFSGNLPPELGNLTKIERLLLNSNNFTGELPPTLAKLTALRQFAIGDNQFYGKMPDFIQNWTSLEKMWILGSGLSGPIPPAIFSLMKNLIELIISDLKGSEYLPLPHLNDTRNLKILTLRNCSINGTIPGYLGTMTNFNKIDLSFNQLTGGIPSTFKNLWRRDIFFTGNLLTESIPSWIDAKEANGDIDLSYNNFNNSQEHTCSKTNVNLFASSSMGNNSGMPMCLRSNSCLEKSRSLYINCGGDSVIYNEGIKYEGDADKAGPARFYYGGGKWAFSTTGYYMDNDTEYYTCSNQSRLSMTDDDAKLYMNARVTPISLTYYGFCLENGRYRLKLHFAEIMFTDDQTYSSLGRRLFDIYIQGEKVLENFNIAERAGGVGKAIIEPFTTDVSNNSLEIRFYWAGKGTTAIPFKSVYGPLISAISVEYIPENGISAGAVAGIVVAVAVIVILVFGILWWRGCIGHRSSLAKDLQGLDLRTGIFTFKEIKAATNNFNIANKIGEGGFGPVYKGTLPNGTIIAVKQLSAKSKQGNREFVNEIGMISALQHPYLVKLYGCCVEGDQLLLIYEFMENNSLASALFGSKELGLKLDWPIRHKICVGIASGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLVEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADIYSFGIVALEIVSGRVNTIHRAKEEAIYLLDWARILKEKGELLELVDPRLGSNFDKEQVMVMVQVALLCTNITPAVRPTMSSVVSMLEGKRVVEEIVSESSEALDEKKLEVIRTLYKQTEERNNITEVQQGTSVDELFAASSTSASDLYPLHLDSSYWDKR	1005

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g02857	1005	Gene3D	Phosphorylase Kinase; domain 1	630	735	-	-
	Accr1g02857	1005	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	629	735	-	-
	Accr1g02857	1005	SUPERFAMILY	Protein kinase-like (PK-like)	644	936	IPR011009	-
	Accr1g02857	1005	Pfam	Malectin domain	406	589	IPR021720	-
	Accr1g02857	1005	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	36	198	-	-
	Accr1g02857	1005	CDD	STKc_IRAK	666	933	-	-
	Accr1g02857	1005	Pfam	Protein tyrosine and serine/threonine kinase	662	930	IPR001245	GO:0004672\|GO:0006468
	Accr1g02857	1005	Gene3D	Ribonuclease Inhibitor	269	405	IPR032675	-
	Accr1g02857	1005	ProSiteProfiles	Protein kinase domain profile.	660	982	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g02857	1005	Gene3D	Ribonuclease Inhibitor	35	192	IPR032675	-
	Accr1g02857	1005	SUPERFAMILY	L domain-like	78	344	-	-
	Accr1g02857	1005	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	14	959	-	-
	Accr1g02857	1005	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	403	594	-	-
	Accr1g02857	1005	Gene3D	Transferase(Phosphotransferase) domain 1	736	949	-	-
	Accr1g02857	1005	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	736	943	-	-
	Accr1g02857	1005	Gene3D	Ribonuclease Inhibitor	193	268	IPR032675	-
	Accr1g02857	1005	Gene3D	-	406	593	-	-
	Accr1g02857	1005	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	782	794	IPR008271	GO:0004672\|GO:0006468
	Accr1g02857	1005	SMART	serkin_6	660	931	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g02857	Accr-Chr1	65563752	65581808	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g02857	22	991	Receptor kinase-like Gene Family	AT1G53420	52.947	0.0	963

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr1g02857		PK_Tyr_Ser-Thr	1.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g02857	-		-	gmx:732563	1203.35