LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g02849	ATGAATATGATGAGGTTGGCTCGGTTCTTCATCCTTTCTCTCCTCACTTTTTGGCCAACTTCTTTTGCTTCTGCAACAAATCTACCAGACGATGAAGTGAAAGCGCTGAAAGATATAGCAGAGACGTTGGGGAAGAAGGATTGGGACTTCCAGGTAGATCCATGCAGTGGAGAAAATGGATGGGTTACGCCTCATCCAGTTCATGGCGATGAAAAAAATGTGACCTGCGTTTGCTCTTTTCTCAAAGATAAAAATGCCACCGTCTGCCACGTCACTAACATAGTCCTGAAAGGGCTAAATCTCCAAGGCACGCTCCCTCGTGAACTGGTCAACTTACCCTATCTTCGAGAAATTGATCTCGCTCGCAATTACCTGAGCGGCACAATCCCTAAAGAATGGGGCTCCTTGAAACATCTTGTCAACATTTCCCTCCTTGGAAATCGATTGACCGGCCCAATCCCGGCAGAGCTGGGAAATCTCATCAGTCTCAAAAGCATGGTTTTGGAGTTCAATCAATTATCTGGACACCTGCCTCCGGAGCTTGGGAATCTTACCCACATTCAAAGACTGTTTCTTACTTCCAACAATTTTTCTGGGGAATTGCCTGCAACATTTGCTAGGCTTACTAGATTGATAGACTTCCGGATTGGTGGCAATCAATTTTCTGGAGAGATACCCAGTTTTATTGGGAGCTGGACGAATCTGGTGAAATTAGTGATCCAAGGGAGTGGTTTGAGTGGGCCAATTCCCTCAGAAATTTCGTTTCTGCATAATATGTTTGACTTGAGAATTACTGACTTGAATGGACCTGATTCCACTTTTCCACAACTTGCTGGGATGACAGGATTGCAAAAATTGATACTAAGGAGTTGCAATATAACTGGAACATTACCTGAATATCTTGGAACAATGACCAGTATAAAATCCTTAGATCTCAGTTTTAACAAATTAACTGGACAAATTCCAAGAACCTATGCCGGCTTAAGAAAAGCAGAATACATATATTTAACTGGAAACCTTCTCTCTGGACCAGTGCCTGAGTGGGTAGAAAGTTCCGGCTTTGTAGATCTTTCATACAACAACTTCACCGTTGGAGGGCCAAGGCAGCCAACATGTAAAACGGGCAATGTGAACCTGTTTTCAAGCACCCTGACAGGAAATAACTCGGGAACAGTTCCATGTTTGAGAGGCTTTCACTGTCCTAAAACCTGGTACTCTCTACATATTAACTGTGGCGGCCCGCAATTAACAGTAAACAAAAGTACAATATTTGAAGAAAATTCAGATGGGTCCGGATCAGCAAGATTTGACCAGAGTAACACAAATTGGATAATGAGCAGCACTGGTTACTTATTGGATAAAGAACGCATAGACTACTATACCGTGCGAAGTTCGGCTGCACTCTCTATGACCGATGCTGAACTATACATGGATGCACGTGTTTCTCCACTCTCTTTGAGTTATTTTGCATTTTGCATGGGAAACGGAAAATACACAGTAAAGCTCCATTTTGCAGAGATAATGTTCACAGACGATAAGACATATAGCAGCCTTGGAAGGCGTGTATTTGATGTCTTCATTCAGGGAAAGCTGGTGCTGAAGGATTTCAATATTGCAGAAGAAGCGGGAGGAGTTGGTAAGGCAGTCATCAAAGAATTCACTGGTATTGTGACTAGGAATTCATTGGAGGTCCGCCTCTATTGGGCTGGGAAAGGGACAACTGCTATTCCATATAAATCACTATACGGCCCACTTATATCAGCTATATCTGTGGATCCTGACTTCAAACCGCCGTTGGAAAATAAAAGTAGCATATCTGGAGGGGCAGTGGCTGGCATTGTGGTTGCTGGAGCAATTTTTATAATCCTGGTATTTGGTCTACTTTGGCGGATTGGCTGTCTAGGACCCAAAAATTCATTTGCAAGAGTGACAGGGCTAAAGATCTTAGATCTGCAAACTGGAATATTTACTTTGAGGCAAATCAAAGCAGCGACAAACAACTTTGATGTTACCAATAAGATTGGAGAAGGGGGGTTTGGTCCTGTTTACAAGGGCTTTCTGTCAGATGGCACCATAATAGCAGTTAAGCAACTTTCTTCTAAATCAAAGCAAGGAAATCAGGAATTTATAAATGAGGTAGGCACGATTTCTGCTATGCAACATCCTTGTCTTGTTAAGCTTTACGGCTGTTGTGTTGAGAGAGATCAATTGTTGCTGGTCTATGAATACATGGAAAACAACAGTCTTGCTCGTGCTTTATTTGGCAAAGAAGGTCAAATACATTTAGACTGGCCGACAAGATACAGGATTTGTGTCGGTATTGCTAGAGGTCTAGCTTTCCTCCATGAAGAATCAAGATTGAAGATCGTTCATAGGGACATTAAAGCCACCAACGTGTTGCTTGATAAAGATCTCAATCCAAAGATATCCGATTTTGGTTTGGCCAAACTTTATGAAGAGGAAGATACCCATGTCAGCACTAGAATAGCTGGGACATATGGATACATGGCTCCTGAATATGCAATGCGTGGTCATCTGAGTAACAAAGTAGATGTCTATAGTTTTGGTGTTGTTGCACTGGAAATTGTTAGCGGGAAGAGCATCAACATGGACCATAGCATCCATCTTCTTGATTGGGCGCATTTGTTGAAGGAAAACGACAATGTAATGGAGATAGTGGATCCAAGGTTGAATTCCAAGTTTAAAGAAGCAGAGGCTATGGTGATGATCAATGTAGCTTTGCTATGCACAAATGTGAGTGCATCACTCAGGCCCACCATGTCTTCGGTGGTGAGCATGCTTGAAGAAAGAACTGTTAGGGAGGTGGTTTCAGATGGGAGTGAGGTGAAGGATGAGATGAAGATGAGAAAGTATTTCCAAAAGAGAAGGAGAAATAGCATATCAGCGGAGGAGGGGTCATCATGTATTGATTCACCGACATCAGTCACTGATCTCTATTCTGTTCACTTGGATTCCTCTTATTGGATGAACAGCTGTTAG	3000	0.4253	MNMMRLARFFILSLLTFWPTSFASATNLPDDEVKALKDIAETLGKKDWDFQVDPCSGENGWVTPHPVHGDEKNVTCVCSFLKDKNATVCHVTNIVLKGLNLQGTLPRELVNLPYLREIDLARNYLSGTIPKEWGSLKHLVNISLLGNRLTGPIPAELGNLISLKSMVLEFNQLSGHLPPELGNLTHIQRLFLTSNNFSGELPATFARLTRLIDFRIGGNQFSGEIPSFIGSWTNLVKLVIQGSGLSGPIPSEISFLHNMFDLRITDLNGPDSTFPQLAGMTGLQKLILRSCNITGTLPEYLGTMTSIKSLDLSFNKLTGQIPRTYAGLRKAEYIYLTGNLLSGPVPEWVESSGFVDLSYNNFTVGGPRQPTCKTGNVNLFSSTLTGNNSGTVPCLRGFHCPKTWYSLHINCGGPQLTVNKSTIFEENSDGSGSARFDQSNTNWIMSSTGYLLDKERIDYYTVRSSAALSMTDAELYMDARVSPLSLSYFAFCMGNGKYTVKLHFAEIMFTDDKTYSSLGRRVFDVFIQGKLVLKDFNIAEEAGGVGKAVIKEFTGIVTRNSLEVRLYWAGKGTTAIPYKSLYGPLISAISVDPDFKPPLENKSSISGGAVAGIVVAGAIFIILVFGLLWRIGCLGPKNSFARVTGLKILDLQTGIFTLRQIKAATNNFDVTNKIGEGGFGPVYKGFLSDGTIIAVKQLSSKSKQGNQEFINEVGTISAMQHPCLVKLYGCCVERDQLLLVYEYMENNSLARALFGKEGQIHLDWPTRYRICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLYEEEDTHVSTRIAGTYGYMAPEYAMRGHLSNKVDVYSFGVVALEIVSGKSINMDHSIHLLDWAHLLKENDNVMEIVDPRLNSKFKEAEAMVMINVALLCTNVSASLRPTMSSVVSMLEERTVREVVSDGSEVKDEMKMRKYFQKRRRNSISAEEGSSCIDSPTSVTDLYSVHLDSSYWMNSC	999

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g02849	999	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	744	945	-	-
	Accr1g02849	999	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	637	743	-	-
	Accr1g02849	999	Gene3D	Ribonuclease Inhibitor	78	393	IPR032675	-
	Accr1g02849	999	Gene3D	-	404	593	-	-
	Accr1g02849	999	SUPERFAMILY	Protein kinase-like (PK-like)	653	937	IPR011009	-
	Accr1g02849	999	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	404	594	-	-
	Accr1g02849	999	Pfam	Leucine rich repeat	282	341	IPR001611	GO:0005515
	Accr1g02849	999	Pfam	Protein kinase domain	669	931	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g02849	999	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	15	960	-	-
	Accr1g02849	999	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g53420	29	268	-	-
	Accr1g02849	999	SUPERFAMILY	L domain-like	86	363	-	-
	Accr1g02849	999	Gene3D	Transferase(Phosphotransferase) domain 1	744	960	-	-
	Accr1g02849	999	SMART	serkin_6	668	934	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g02849	999	CDD	STKc_IRAK	674	936	-	-
	Accr1g02849	999	Pfam	Malectin domain	406	589	IPR021720	-
	Accr1g02849	999	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	789	801	IPR008271	GO:0004672\|GO:0006468
	Accr1g02849	999	Gene3D	Phosphorylase Kinase; domain 1	637	743	-	-
	Accr1g02849	999	ProSiteProfiles	Protein kinase domain profile.	668	939	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g02849	Accr-Chr1	65427008	65433620	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g02849	22	960	Receptor kinase-like Gene Family	AT1G53420	54.849	0.0	1002

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr1g02849		Pkinase	4.7e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g02849	-		-	qsa:O6P43_001072	1265.75