Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02725 ATGGCGAAACCTGGGCGAGGCCGTCGCTCACCCCCGTCAGGTTCCATTTCGGGCTCCTCATCGCGCTCGAAGTCCTCCTCTCCCTCCGATTCCCGCTCCAGCTCCCGCTCCCGCTCCCTTTCCCGTTCTCCCTCTCGCTCTAGATCCTCTTCCTTGTCCTCTTCTCCATCCCGCAGTGTCAGCTCCGGGAGCCGAGGCCCCCCTCCTCCAAGGAGGAAAAGTCCTGCTGAAGCTGCTAGGAGAGGTAGATCTCCTCCCCCCCAATCTAAAAGGATATCCCCACCCCCCAGGAAACCTTCTCCTGTTCGTGAATCACTTGTTCTTCACATAGACAAACTCAGCAGGAATGTTCATGAAGGCCATTTGAAAGAAATATTCAGTAACTTTGGTGAGGTTGTGAATGTGGAGTTGGCCATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTACTATACATGGATGGTGCCCAAATAGATGGTAATATTGTTAAGGCCAGGTTCACCTTGCCGCCCAGGCAGAAGGTTTCACCACCCTCAAAGGCTCATGCTGTTGCTCCTAAGAGAGATGCTCCCAGAGCAGATAATGCTAGTGTAGATGCTGAAAAAGATGGGCCTAAGCGGCCAAGAGAACCTTCTCCTAGGAGACGACCTCCTTCACCACGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCACCAAGACGACCAGATTCTCCTGTTCGTCGTCGAATAGACTCACCCTATCGTCGTGGAGACACTCCTCCTAGGAGAAGGCCTGTCTCCCCTGCAAGAGGCAGATCTCCAACTCCTCCTAGGCGCCTTAGGTCCCCTGCAAGTAGGGTCTCACCCAGAAGGATGCGTGGAAGTCCAATTCGCAGGCGTTCTCCTCCTCCTCTGAGGCGCCGTTCACCACCGAGACGAGCTCGTAGTCCTAGAAGGTCTCCAATCAGTCGCAGACGTAGTCGCTCACCGCCACGAAGGTCTGCACGCTCCCGATCAAGATCATTCTCACCACCACTACGGAGAGGTCGGCCACCCATTAGACGTGGAAGGTCATCATCATCCTACTCTGATTCTCCAAGTCCTCGCAAGGTAACCCGGAGATCAAGGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGTAGTAGCAACAGCAGCAGCAGCAGCTCACCACCCCCAGCTCGCAGACCATAG 1239 0.5424 MAKPGRGRRSPPSGSISGSSSRSKSSSPSDSRSSSRSRSLSRSPSRSRSSSLSSSPSRSVSSGSRGPPPPRRKSPAEAARRGRSPPPQSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPSKAHAVAPKRDAPRADNASVDAEKDGPKRPREPSPRRRPPSPRRRSPVPRRVGSPRRPDSPVRRRIDSPYRRGDTPPRRRPVSPARGRSPTPPRRLRSPASRVSPRRMRGSPIRRRSPPPLRRRSPPRRARSPRRSPISRRRSRSPPRRSARSRSRSFSPPLRRGRPPIRRGRSSSSYSDSPSPRKVTRRSRSRSPRRPLRGRGSSNSSSSSSPPPARRP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02725 412 Gene3D - 14 191 IPR012677 -
Accr1g02725 412 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 264 - -
Accr1g02725 412 MobiDBLite consensus disorder prediction 248 273 - -
Accr1g02725 412 MobiDBLite consensus disorder prediction 12 64 - -
Accr1g02725 412 MobiDBLite consensus disorder prediction 1 103 - -
Accr1g02725 412 MobiDBLite consensus disorder prediction 199 231 - -
Accr1g02725 412 MobiDBLite consensus disorder prediction 183 412 - -
Accr1g02725 412 MobiDBLite consensus disorder prediction 300 343 - -
Accr1g02725 412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Accr1g02725 412 CDD RRM_RNPS1 108 180 IPR034201 -
Accr1g02725 412 SUPERFAMILY RNA-binding domain, RBD 93 190 IPR035979 GO:0003676
Accr1g02725 412 SMART rrm1_1 107 180 IPR000504 GO:0003723
Accr1g02725 412 FunFam Serine/arginine-rich splicing factor SR45 3 191 - -
Accr1g02725 412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 176 IPR000504 GO:0003723
Accr1g02725 412 MobiDBLite consensus disorder prediction 392 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02725 Accr-Chr1 63875318 63880250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02725 108 181 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 2.74e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02725 K14325 - gmx:100783566 285.034