Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02642 ATGGATGCAAAGAGTGTTGCCTCTCAGCTGAAGAGTTCTGGTCTTTTGCGGACTCAGGGTCTTGTTGGAGGCAAATGGAGTGATTCCTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATAGCAGATATTGCATGCATGGGTGGAAGAGAGACAAATGATGCGATATCCTCAGCCTATGATGCATTTCAATCTTGGAGCAAAACCACTGCTGCTGAGAGGAGCAAACTTCTGAGAAAATGGTATGATTTGCTAATGGCACACAAAGAAGAGCTTGCACAACTTATAACCTTAGAGCAAGGAAAGCCTCTTAAAGAATCTATTGGTGAGATAAATTATGGGGCTAGTTTTATTGAGTTTTCAGCAGAGGAGGCAAAGCGTGTATATGGAGATATAATTCCTGCACCACTATCCGATCGACGGCTATTTGTTTTAAAACAGCCTGTAGGTGTTGTTGGTGCCATCACACCTTGGAACTTTCCTTTGGCCATGATTACCCGGAAGGTTGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCGTTAAGCCCTCTGAACTTACTCCTCTCACAGCTTTGGCTTCAGCAGAGCTTGCGATTCAGGCTGGAATACCAGCGGGTGTTGTGAATGTAGTTATGGGAAATGCTCCTGAAATTGGGGATGCTATACTTGCGAGTCCACAGGTAAGGAAGATCACATTTACTGGCTCAACAGCAGTTGGCAAAAAGTTGATGGCAGGTGCTGCTGGAACAGTTAAAAGAGTATCTCTGGAACTTGGTGGCAATGCCCCTTGCATAATATTTGATGATGCTGATCTTGATGTGGCAGTAAAAGGAACTGTTGCAGCTAAGTTCCGTAATAGCGGACAAACATGTGTATGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGACAAATTTGCAACTGCTATCCTTGGTGCTGTTAAGAATATGAAAGTTGGGGACGGTTTTAGTGAAGGTGTGGTTCAGGGACCTCTAATCAATGAAGCTGCTGTGGAAAAGGTTGAATCCTTACTTCGTGATGCTACCTCTAAGGGAGCAAAAGTAATTCATGGGGGTAAAAGACACAGCCTTGGATTCACTTTTTATGAACCTACTGTCGTCACTGATGTCAACAATGAGATGCGCATTTCAAGGGAGGAAGTATTTGGACCAGTTGCTCCTCTTTTGAGATTTAAAACTGAGGAGGAGGCTATCAAAATCGCCAACGACACTAATGCAGGATTGGGTTCATATATATTTACAAACAGCGTTCAACGCTCTTGGCGTGTTGCTGAGGCTCTTGAATATGGACTTGTCGGTGTAAATGAAGGAGTAATTTCAACTGAGGTTGCTCCATTTGGCGGTGTTAAACAGTCCGGCCTTGGAAGAGAAGGCTCCAAATATGGACTGGATGAATATTTGGAGATTAAATATGTTTGCTTGGGAAACATGAACAAAGAATGA 1482 0.4325 MDAKSVASQLKSSGLLRTQGLVGGKWSDSYDGKTIKVYNPATGESIADIACMGGRETNDAISSAYDAFQSWSKTTAAERSKLLRKWYDLLMAHKEELAQLITLEQGKPLKESIGEINYGASFIEFSAEEAKRVYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVVKPSELTPLTALASAELAIQAGIPAGVVNVVMGNAPEIGDAILASPQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADLDVAVKGTVAAKFRNSGQTCVCANRILVQEGIYDKFATAILGAVKNMKVGDGFSEGVVQGPLINEAAVEKVESLLRDATSKGAKVIHGGKRHSLGFTFYEPTVVTDVNNEMRISREEVFGPVAPLLRFKTEEEAIKIANDTNAGLGSYIFTNSVQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGLDEYLEIKYVCLGNMNKE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02642 493 FunFam Succinate-semialdehyde dehydrogenase I 265 454 - -
Accr1g02642 493 CDD ALDH_F5_SSADH_GabD 37 487 - -
Accr1g02642 493 Pfam Aldehyde dehydrogenase family 26 485 IPR015590 GO:0016491
Accr1g02642 493 FunFam Aldehyde dehydrogenase, putative 457 483 - -
Accr1g02642 493 FunFam Succinate-semialdehyde dehydrogenase I 32 275 - -
Accr1g02642 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 32 479 IPR016162 GO:0016491
Accr1g02642 493 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 261 268 IPR029510 GO:0016491
Accr1g02642 493 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 11 490 - -
Accr1g02642 493 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 289 300 IPR016160 GO:0016491
Accr1g02642 493 NCBIfam succinate-semialdehyde dehydrogenase 37 483 IPR010102 GO:0009013|GO:0009450
Accr1g02642 493 SUPERFAMILY ALDH-like 13 491 IPR016161 GO:0016491
Accr1g02642 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 265 454 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02642 Accr-Chr1 62646444 62657839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02642 1 493 Aldehyde Dehydrogenase Gene Family AT1G79440 81.339 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02642 K17761 - gmx:100808318 896.73