Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02628 ATGGCACCGATGAGTCTCCCACCTGGGTTCAGGTTCCACCCAACAGATGAAGAACTTGTTGCTTACTATTTGGAAAGAAAAATCACAGGCCGTTCTATAGAGCTTGAAATTATCCCTGAAGTTGATCTTTACAAATGCGAACCCTGGGATTTGCCAGAGAAGTCCTTCTTACCAAGTAAGGATATGGAGTGGTACTTCTTCAGTCCAAGAGACAGAAAGTATCCAAATGGGTCAAGAACAAACAGAGCAACAAGAGCTGGATACTGGAAAGCCACAGGGAAAGATAGGGCAGTTCACTCTCAGAAACGACAAGTAGGAATGAAGAAGACGTTGGTTTATTACAGAGGAAGAGCCCCACATGGCATCAGAACCAACTGGGTCATGCATGAGTATCGTCTTACTCATTCAATACCTCCCACTTCCTCTTGCTCCTTGAAGGATTCTTATTCATTGTGTCGTGTCTTCAAGAAGACGATCCAAATCCCAAAACCAAAAGAAGATCAGGATCAGGAAGAGGAAACAGAAATGACTGCTAATAAGAATAAGGGATCAAAGTCTGACATGTGGGTCGCAGAAGAAAAAGGACGAAGAGAAGATTCAAGTGGCTTCGAGGTTTCTAAAGAAATGGAAATGGAAATTGCAGATGAGAAAAGAATGGTCAATAATAATGATGATGATGGTGACAATTTTAATAGTAAATTTCCTTTTGATAATGCTTCATCCTCGGATCTCACTCAAGGGACCCCCATCGACCAAACTGGTGTAACAGATAATGATTTTCAAGCCCAAATTGCTTCGGATGAAGCAAATAGTGCAGCTAATCCGTATTCCCTTGGAATTGACTATTCGTCAAATCTATTTCAGTTACAGGAAATGGAGCTACAAATGTATGCTGGAATGCACTATCAACTTCCATATCCTGCATTGGAGCTTGAAGATTTCCCTCAAACAAGTTTTGGAGAGACGAAGCCATTAATAAAGCCAGCAGATCAACAAATGGTGATGAATGATTGCTCGGTGTATGATCAGAAATACAAGAGCTGTGGTACCATGAGTGGGACCCTAGAAGAGATCATATCCTTGTGTTCTTCTCATCAAAACAATAACTCTTTACCTCTCTCTATGTTAGATTGA 1134 0.4109 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELEIIPEVDLYKCEPWDLPEKSFLPSKDMEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKRQVGMKKTLVYYRGRAPHGIRTNWVMHEYRLTHSIPPTSSCSLKDSYSLCRVFKKTIQIPKPKEDQDQEEETEMTANKNKGSKSDMWVAEEKGRREDSSGFEVSKEMEMEIADEKRMVNNNDDDGDNFNSKFPFDNASSSDLTQGTPIDQTGVTDNDFQAQIASDEANSAANPYSLGIDYSSNLFQLQEMELQMYAGMHYQLPYPALELEDFPQTSFGETKPLIKPADQQMVMNDCSVYDQKYKSCGTMSGTLEEIISLCSSHQNNNSLPLSMLD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02628 377 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Accr1g02628 377 MobiDBLite consensus disorder prediction 163 206 - -
Accr1g02628 377 FunFam Nac domain-containing protein 86 15 160 - -
Accr1g02628 377 MobiDBLite consensus disorder prediction 225 252 - -
Accr1g02628 377 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Accr1g02628 377 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Accr1g02628 377 MobiDBLite consensus disorder prediction 221 252 - -
Accr1g02628 377 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Accr1g02628 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02628 Accr-Chr1 62468507 62472337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02628 1 360 NAC Transcription Factor Family AT1G54330 50.552 1.42e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g02628 NAM 7.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02628 - - gmx:100790679 465.692