Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02604 ATGATGCAAGGAAGTGGACAAATAGCAGTGCCTCCAGGTTTCAGGTTTCACCCAACAGAGGAGGAGCTTCTTTACTATTATCTGAGGAAGAAAGTCTCTTTTGAAGCCATTGACCTTGATGTCATCCGAGAAGTTGATCTCAACAAACTTGAGCCTTGGGATCTCAAAGAAAAATGTAGGATTGGATCAGGACCTCAGAACGAGTGGTACTTCTTCAGCCACAAGGATAAGAAGTACCCGACTGGAACCCGAACAAACCGGGCGACAATGGCCGGATTCTGGAAAGCAACAGGAAGGGACAAGGCCATTTTCATGAGCAATTCAAAGAGGATAGGGATGAGGAAAACCCTAGTGTTCTACACAGGCCGTGCTCCTCACGGCCAAAAGACTGACTGGATCATGCATGAGTACCGCCTAGACCAAGATGATGCTGATCAGCTTCAGGAAGATGGGTGGGTGGTGTGTAGGGTATTCAAGAAGAAGAACTTCAACAGAGGATTTCAACAGGAAATGGAAGAAGATGAGCAGATAATGAGCCACCACATGGCATCAACAAGTACTGCTTCTCATAATAATTGCATGAAGTTATTCAGCCCAGAATCTGCTGTACCACCCCTTCCTTCTGCAACTTCTTCGTCGTCTTCCACGTCGACTACTATGAACCCTATGGACGTCCTTCACTGTTCTCAAAGCTTACTTAGGCTGGCTTCAACTTCTTCTCTTCCACCTGGAGGACTCCTTAGTAATCTCATGCAGCAACAATGTGATCATCAGAGACTCAATAATAATAATGGAGAATGGTCCTTCTTGGAGAAGCTATTAGCTTCACAACAACAACATCAACCTGTGGTTCCTCCTCTGGCTTCTTCTTCCCACAAGTTCCCTTTTCATTATCTCGCTTGTGATCAGAGTGACATCATGAAGTAA 927 0.4531 MMQGSGQIAVPPGFRFHPTEEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKEKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAIFMSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDQDDADQLQEDGWVVCRVFKKKNFNRGFQQEMEEDEQIMSHHMASTSTASHNNCMKLFSPESAVPPLPSATSSSSSTSTTMNPMDVLHCSQSLLRLASTSSLPPGGLLSNLMQQQCDHQRLNNNNGEWSFLEKLLASQQQHQPVVPPLASSSHKFPFHYLACDQSDIMK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02604 308 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Accr1g02604 308 MobiDBLite consensus disorder prediction 204 220 - -
Accr1g02604 308 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Accr1g02604 308 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Accr1g02604 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 252 - -
Accr1g02604 308 MobiDBLite consensus disorder prediction 201 220 - -
Accr1g02604 308 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Accr1g02604 308 FunFam NAC domain-containing protein 19 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02604 Accr-Chr1 62178692 62180229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02604 2 276 NAC Transcription Factor Family AT1G79580 54.658 3.60e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g02604 NAM 3.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02604 - - vun:114178728 390.963