Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02584 ATGGGAAGAGGGAAGATAGAAATAAAGAGGATAGAGAACACAACGAATCGCCAAGTGACATTCTGCAAGAGAAGGAATGGTCTTCTCAAGAAGGCCTATGAGCTTTCTGTACTCTGCGACGCAGAAGTTTCCCTAATTGTTTTCTCCAGTAGAGGCCGCCTCTACGAATATTCTAACAACAACATAAGGTCAACTATAGAGAGGTACAAGAAGGCATGTTCAGATAATTCAGGTGCAAGCTCTATTACTGAGATCAATGCTCAGTATTATCAGCAAGAATCGGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTAATGGGTGATGCGTTGAGCACACTCACAGTGAAGGAACTGAAGCAGCTGGAAAATAGACTAGAAAGGGGAATCTCTCGTATCAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAAATCGAATACAGGCAAAAGAGGGAGATTGAGCTGGAGAATGAAAATCTCTGCCTTCGGACAAAGCTAGGAGAAATGGAGAGGGTGGAGCAGGAAGCAAACATGGTGTCAGCTGGAGAGGAACAGCAGCTGAGTGCGATGCAGCAAGCTTTGGCTTCTCGCAATTTCTTCAATCCAACAACCATCATGGACCTTTCTGCAAGTCCCTACCCTCACTCTGACAAGAAGTTGCTTCATCTCGGGTAA 690 0.4522 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNNIRSTIERYKKACSDNSGASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENLCLRTKLGEMERVEQEANMVSAGEEQQLSAMQQALASRNFFNPTTIMDLSASPYPHSDKKLLHLG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02584 229 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Accr1g02584 229 Coils Coil 121 144 - -
Accr1g02584 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr1g02584 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Accr1g02584 229 Coils Coil 87 107 - -
Accr1g02584 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr1g02584 229 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Accr1g02584 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr1g02584 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr1g02584 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr1g02584 229 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr1g02584 229 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Accr1g02584 229 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Accr1g02584 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr1g02584 229 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr1g02584 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02584 Accr-Chr1 61997049 62002654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02584 1 229 MADS-box Gene Family AT4G09960 70.386 2.21e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr1g02584 K-box 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02584 K09264 - gmx:100301905 365.925