Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02581 ATGGCCCAGCAGTCATCTAGACTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGCCAAATCGGGGACATTGCAAAATCTCATCCTCAAGACTTGATCAGCCTGCTAAAGAAAGTATCTCAATATCTACATAGTAAAAGTTGGGATACAAGAGTTGCAGCTGCCCATGCAATTGGGGCTATTGCTGAGAATGCGAAGCACACAAGTTTGAATGAACTTATTGCTGCTGTTGCAACAAAATTGTCTGAAGCTGGGATATCTGGTAGTGTTGAAGATATATGTGCATGGACTTACTTACAATCTAGAATTACGGGAAGCGCATTTAGGAGCTTTGACCTCAACAAGGTTCTTGAATTTGGTGCGTTATTAGCTTCTGGAGGACAGGAGTATGATATAGGAAGTGATAATGTAAAGAACCCAAAGGAGCGATTGGCTCGCCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTGTGCGAACAATTCATGGATATCAGTGATGTGATAAGAGATGAAGATCTTATGGCATATAAATCAGATATACATCCATATGGAATCGATCATAGAGTTTTTACATCTCATTCTGTACATAACATCCAGAAAATGGTTGCCAATATGGTTCCTAGTGTTAAATCTAAGTGGCCAAGTGCAAGAGAACGAAATCTCTTAAAACGTAAAGCAAAAATGAACTCAAAAGACCAAACAAAAGGCTGGTGTGAGGATGGAAGTGCAGAGGCATCACTTGCTCAAAATGCAACTTCTAGAGGCACATATCCTGATTCAGTAAATTGCAATAAGGCTTTCATTTATGGTAATCATGATGAAGATGGATTTGATCATGATGGAGATGGGCGATGGCCTTTCCACATTTTTGTTGAGCAGCTTATTATTGATATGTTTGATCCTGTTTGGGAGGTGCGCCATGGCAGTGTGATGGCTTTGAGGGAGATTTTAACACATCAAGGTGCATCTGCTGGCGTATTAAAACCGGACTCACGCTTGGGTGAAGTACTAGTTCTTGAATTGGAGGATGGAAGCGTTTCAAATGTACTAAAGAGAGACAGGGAGATAGATTTGAATATGCAAATTTCAGGGGATGAGTTTGAGTCAGACTTTAAGAGGCCCAAGCTTGAAGATGTATCATCCACTTCCATGGATGTGAGGACCATATGCAGCAATGGGGGTGATATTGAAATCAGCATTGGTACTGAAACTCTTGGATGTGGTTTACCCATGGATGACAGGAATGGACAAATTAATGATTGTTCTGTGGGCTTGGATCTCAAATCTTATTCTGAGGGTTTATGTCATTCATGCGAGGAACCAGCTAATATAGCTGAGCAGAAGGATTATTCTGGCGAGGATAAGATTCCATCTGGCAATCTTAATGGGCTTCCTCAGAATTGTGAGCTTGTGAACTTGCTTAATGTGACTAAAAGTTCGTGGCTTCAAAACTACGGATTTCTTCAAGATTGTGTAATACGCTTCTTGTGTGTGTTGTCATTAGATCGCTTTGGTGATTATGTCTCTGATCAGGTTGTTGCTCCTGTACGGGAGACCTGTGCACAAGCTTTAGGTGCTGCATTCAAGTACATGCGTCCAGCATTAGTAAATGAAACATTAAATATATTGTTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGCAGCCTTTTAGGGATCAAATATTTAGTTGCTGTGCGGCAGGAAATGCTTCCAGAATTGCTTGGGCGTGTTCTTCCTGCATGCAAACTTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCGATTGTTGCTTTACCGGGTCAAACTTTGCACTCGATTGTGATGCTATTGTGGGACATTCTGCTTGATTTGGATGACTTAAGCCCATCCACTAGCAGTGTAATGAATCTTCTGGCAGAAATTTATTCTCAGGATGAGATGGTTCCAAAGATGAACCATGCAATTGATTTGGGAGATACAGAAATGGTTAATCTAATTGGAGTTGGTGGCAGCGGTGATAGTGATCATGACAAAAATCCTTATATGCTTTCGATGTTGGCACCACGCTTATGGCCTTTTATGAGGCATAGCATCACCTCTGTTCGGTTTTCAGCAATTCGTACTTTGGAGCGGCTGCTTGAAGCTGGATACAAGAGAAGCATGTCTGAGCAATGCTATTCTTCATTTTGGCCTTCTTTTATCCTAGGAGATACCCTTCGAATTGTATTTCAGAATCTGCTATTGGAATCAAATGAGGCTATATTGCAGTGTTCTGAGAGAGTTTGGAGGCTTCTTGTTCAGTGTCCTGTGGAGGATTTGGAGATGGCTGCTAGATCTTACATGAATTCCTGGATAGAACTTGCATCTACCCCATTTGGTTCAGCATTAGACACCTCAAAAATGTTTTGGCCTGTTACCTTCCCACAAAAAAGTCAATCTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGCTTGAAAATGAATATGGTGGAGATCTTGGCTCAGATTCTACTAAAGGAATAAATCTACAAGAAAGAAATGGAGATGTTTCCATGGGTTCTGTCAAGATTGTTGTTGGTGCGGATGTTGATACATCAGTAACTAATACTAGAGTGATTACTGCTACTGCATTGGGAATTTTTGCTTCTAAGCTGCCAGAGGTTTCTATTAAATATGTGATTGACCCGCTGTGGAATGCTCTGACCTCTTTGTCTGGTGTCCAGCGCCAGGTTGCATCCATGGTATTTATTTCTTGGTTCAAGGACATTAAACGAAGTCAAATATCTGAAAACCTTAAGATTGTTCCTGTTGTCCCTAATTTTGTCAAAGACTGGCTGCTGGACTTATTGGCACGTTCTGATTCGGCATTCCCAACCAAGGATTCATGTCTTCCTTATGCTGAGCTGTCAAGAACATATTCAAAGATGCGTAGTGAGGCTGGTCAATTGCTTAATGCTATGAAATGTTCTGGTATTTTTGATGACTTATTGTCAACTATGAAAGTTGAGTTGGAGAGCTTGAGTGTGGATGATGCCATTAATTTTGCTTCAAAAGTTCCAGCTTTGTCTAGTGAAAGTTCTGGGAATGAGTTCTCAGGAAGAAACATTATGGACGATATTGAGTCATCAAAACAGAGACTCTTGACAACTTCTGGCTATTTAAAATGTGTACAGAGCAATTTGCATGTTACGGTTACATCTGCGGTTGCGGCTGCAGTTGTTTGGATGTCAGAATTTCCTTCACGCCTCACCCCAGTTATTTTGCCGTTGATGGCTTCAATAAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCACTGGCTGAGCTTATGTATCACTCTGTTGAACGGAGACCTTGCCCAAATGATAAATTAATTAAGAATATTTGTGGCTTGACTTGTATGGATCCCTCTGAGACACCTCAAGCTGAATTTATTAGATCAATGGACAGTATTGATGACCAAGGTCTCATGTCCTTTGGAACTCCTGGGGGTAAACAGAGATCAAAGGCCAGCGTTCTGGCTGGTGAAGACCGATCAAAGTTTGAAGGTTTTATCAGTAGACGTGGATCTGAACTCTCACTGAGGTTTCTATGTGAGAAGTTTGGTGTTTCATTGTTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAGCCTAGCTCTGCAGAATCTCTTGCTGCTTCTGAGAAAGAAACCACTTTGGTTATTGAGTCTGTCAGCAATCCCCAGACCTTGATTAACAATATTCAGGTGGTACGTTCTATTTCTCCCCTCCTGCATGAGGATTTGAAGCCAAAATTATTGACACTTCTCCCTTGCATCTTCAAATGTGTGAAGCATCCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATTACTTCAATGGCCAGGTCAATGACTTTAAAAGTTATGGGTGCTGTGGTTGAAAATGCTGTCCCTATGTTAGCAGATGCTTCATCAGTTCATGCTCGGCAAGGAGCTGGCATGCTGATTAGTTTTCTTGTTCAGGGACTTGGAGTTGAGCTGGTCCCTTATGCTCCTCTCTTGGTAGTTCCACTTCTTCGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTTACACATAGTTTTGCCACTCTTGTACCTTTACTTCCTTTAGCACGTGGCCTTCCTCCACCTCTTGGTTTAGAGGAGGGTTTATCTAGAAATACAGAGGATGTAAAATTTCTGGAGCAATTACTTGACAATTCTCATATTGAAGATTATCAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGTATAAATTGGTTGGCTTTCTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAAACTCTTCAAGCATCAGCAATTGTGGCATCTGAAATAGCTGAGCGTCAAAGTCTGAATGATCATGAGGAACTTCTTCCGTCTTTAATCATTTGCCCATCAACTCTTGTTGCACATTGGGCTTTTGAGATAGAGAAATATATTGATGTTTCTCTTGTATCTACTCTTCAATATGTTGGTTCTGCTCCAGAACGGATGTCTATTAGAGATAATTTTTCTAAGCATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTAGTTCAGCTGCAATGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCTAAGTCCAAAGTAACTCTAGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGAACACCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGATTTCTTGGTACAGAAAGACAGTTCCATGCCACTTATGGGAAACCACTCCTAGCTGCAAGAGATCCCAAGTGCTCTGCTAGGGATGCTGAAGCTGGAATTCTTGCGATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTGTCCGATCTGCCAGAAAAAATAATTCAAGACAGATACTGTGATTTAAGCCCTGTACAGCTTAAACTCTATGAACAATTTTCTGGTTCTCGTGTCAAACAAGAAATCTCATCTGTAGTAGCAATGGATGAATCGGCTGTGACAGAAGGAAGCAGCAGATCACCCAAAGCATCTTCACACGTCTTCCAGGCACTTCAATACTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTTGTTGGTGAGAAGATTCCTGATCAACTCTCTACCGTTCTCTCAGAATTGTTGCCTGCTGGCTCTGAAATCATTTCAGAACTCCACAAACTACATCATTCCCCAAAATTGGTGGCTCTCCAGGAGATCTTGGAAGAATGTGGAATAGGAGTTGATTCTTCAGGTTCTGAGAGTTCTGTTAGCATTGGTCAGCACAGGGTTTTGATATTTGCTCAACATAAGGCTTTTCTGGATATTATTGAAAGAGACTTATTCCAGACACATATGAAGAATGTCACATATTTGCGACTGGATGGATCTGTTGAGCTGGAGAAGCGTTTTGAAATTGTCAAAACATTCAATTCAGACCCAACCATTGATGTATTGTTGCTTACAACGCATGTGGGCGGGCTTGGTTTGAACCTGACATCCGCTGATACCCTTGTTTTTGTGGAGCATGATTGGAATCCAATGCGAGATCATCAGGCAATGGACAGAGCACACCGTTTAGGGCAGAAAAAAGTTGTCAATGTCCACCGTCTAATAATGCGTGCTACTTTAGAAGAGAAAGTCATGAGTCTACAAAGGTTCAAAGTTTCAGTGGCTAATGCTGTCATCAATGCTGAAAATGCCAGTATGAAAACGATGAATACAGATCAGTTGCTTGATTTGTTCACACCAGCAGAAACCTTGAAGAAGGGAGCTTCTGCTGCGAACCGATCAGATAACACCGATGGAGATACTAAATCCGCGGGCAGTGGGAAGGGGTTGAAAGCAATACTAGGAGGTTTGGACGAACTTTGGGACCATTCACAGTATACAGAAGAGTACGATCTAACTCAATTTTTGTCAAAGCTCAATAGCTGA 6150 0.4163 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLISLLKKVSQYLHSKSWDTRVAAAHAIGAIAENAKHTSLNELIAAVATKLSEAGISGSVEDICAWTYLQSRITGSAFRSFDLNKVLEFGALLASGGQEYDIGSDNVKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAYKSDIHPYGIDHRVFTSHSVHNIQKMVANMVPSVKSKWPSARERNLLKRKAKMNSKDQTKGWCEDGSAEASLAQNATSRGTYPDSVNCNKAFIYGNHDEDGFDHDGDGRWPFHIFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKPDSRLGEVLVLELEDGSVSNVLKRDREIDLNMQISGDEFESDFKRPKLEDVSSTSMDVRTICSNGGDIEISIGTETLGCGLPMDDRNGQINDCSVGLDLKSYSEGLCHSCEEPANIAEQKDYSGEDKIPSGNLNGLPQNCELVNLLNVTKSSWLQNYGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMRPALVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLPELLGRVLPACKLGLEDPDDDVRAVAADALIPAAAAIVALPGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQDEMVPKMNHAIDLGDTEMVNLIGVGGSGDSDHDKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYKRSMSEQCYSSFWPSFILGDTLRIVFQNLLLESNEAILQCSERVWRLLVQCPVEDLEMAARSYMNSWIELASTPFGSALDTSKMFWPVTFPQKSQSRAAAKMRAVKLENEYGGDLGSDSTKGINLQERNGDVSMGSVKIVVGADVDTSVTNTRVITATALGIFASKLPEVSIKYVIDPLWNALTSLSGVQRQVASMVFISWFKDIKRSQISENLKIVPVVPNFVKDWLLDLLARSDSAFPTKDSCLPYAELSRTYSKMRSEAGQLLNAMKCSGIFDDLLSTMKVELESLSVDDAINFASKVPALSSESSGNEFSGRNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPSRLTPVILPLMASIKREQEEILQMKSAEALAELMYHSVERRPCPNDKLIKNICGLTCMDPSETPQAEFIRSMDSIDDQGLMSFGTPGGKQRSKASVLAGEDRSKFEGFISRRGSELSLRFLCEKFGVSLFDKLPKLWDCLTEVLKPSSAESLAASEKETTLVIESVSNPQTLINNIQVVRSISPLLHEDLKPKLLTLLPCIFKCVKHPHVAVRLAASRCITSMARSMTLKVMGAVVENAVPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPLGLEEGLSRNTEDVKFLEQLLDNSHIEDYQLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIAERQSLNDHEELLPSLIICPSTLVAHWAFEIEKYIDVSLVSTLQYVGSAPERMSIRDNFSKHNVIITSYDVVRKDIDYLVQLQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSARDAEAGILAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRVKQEISSVVAMDESAVTEGSSRSPKASSHVFQALQYLLKLCSHPLLVVGEKIPDQLSTVLSELLPAGSEIISELHKLHHSPKLVALQEILEECGIGVDSSGSESSVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVELEKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRATLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFTPAETLKKGASAANRSDNTDGDTKSAGSGKGLKAILGGLDELWDHSQYTEEYDLTQFLSKLNS 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02581 2049 Gene3D - 878 1411 IPR011989 -
Accr1g02581 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1431 1686 IPR027417 -
Accr1g02581 2049 CDD SF2_C_SNF 1801 1943 - -
Accr1g02581 2049 Gene3D - 506 754 IPR011989 -
Accr1g02581 2049 SUPERFAMILY ARM repeat 6 1490 IPR016024 -
Accr1g02581 2049 CDD DEXHc_Mot1 1454 1686 IPR044078 GO:0005524
Accr1g02581 2049 FunFam TATA-binding protein-associated factor BTAF1 1202 1412 - -
Accr1g02581 2049 Pfam Helicase conserved C-terminal domain 1832 1932 IPR001650 -
Accr1g02581 2049 FunFam TATA-binding protein-associated factor 172 1696 2014 - -
Accr1g02581 2049 Gene3D - 1696 2015 IPR027417 -
Accr1g02581 2049 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1424 1685 - -
Accr1g02581 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1687 1987 IPR027417 -
Accr1g02581 2049 Gene3D - 1425 1685 IPR038718 -
Accr1g02581 2049 Pfam Domain of unknown function (DUF3535) 781 1238 IPR022707 -
Accr1g02581 2049 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Accr1g02581 2049 SMART helicmild6 1846 1932 IPR001650 -
Accr1g02581 2049 Gene3D - 4 95 IPR011989 -
Accr1g02581 2049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1466 1636 IPR014001 -
Accr1g02581 2049 MobiDBLite consensus disorder prediction 1995 2015 - -
Accr1g02581 2049 SMART ultradead3 1450 1647 IPR014001 -
Accr1g02581 2049 MobiDBLite consensus disorder prediction 1997 2011 - -
Accr1g02581 2049 Pfam SNF2-related domain 1472 1768 IPR000330 GO:0005524|GO:0140658
Accr1g02581 2049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1823 1978 IPR001650 -
Accr1g02581 2049 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2048 IPR044972 GO:0003677|GO:0016887|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02581 Accr-Chr1 61952217 61972179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02581 1426 1986 RAD5 or RAD16-like Gene Family AT1G02670 26.240 8.07e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr1g02581 DUF3535 4.1e-100 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02581 K15192 - gmx:100777977 3172.49