Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02578 ATGTTTCAAAATATGTTTCCAATTGCTACCAATCAGATGCAGCCATTCAGTGCCCTCCCCGTCATGCCAGTCCAGGCTATGACCCAGCAGGCTACTCGACATGCGAGGCGGGTTTATGTTGGAGGACTCCCTCCTACAGCCAATGAACAGTCTGTTGCAACTTTCTTTAGTCAGGTCATGGCTAAGATCGGAGGAAATACTGCTGGTCCGGGCGATGCTGTTGTTAATGTCTATATTAACCATGACAAGAAATTTGCTTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGCAATGCAATGGCTCTAGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTAAGGAGGCCTACTGATTATAACCCTTCCCTAGCCGCTACCCTTGGTCCTAGCCAGCCTAATCCAAACCTGAATCTATGCGCTGTGGGCCTAACACCTGGCTCTGCTGGTGGACTTGATGGTCCTGATCGTATTTTTGTGGGCGGTCTTCCTTATTACTTCACGGAAACACAGATCCGGGAGCTTTTAGAGACTTTTGGTCCCCTTCGGGGCTTTGATTTGGTGAAAGATAGGGAAACAGGAAACTCAAAGGGTTATGCATTCTGTGTTTATCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCCAATCAAGGTGCAAACCAGCCAAAACCTGAGCAAGAAAGCATATTAATGCATGCACAGCAGCAAATTGCCATACAGAAACTCATGCTTCAGCCAGCATTGGTGGCAACGAAGGTTGTTTGTTTAACTAATGCCATATCTGCTGATGAGCTTAAAGATGATGAGGACTATGAAGAGATTGTTGATGATATGAGAACAGAGTGCGCTAAATTTGGCACCTTGGTTAATGTTGTGATACCTCGCCCCCAACTGAATGGGGAGCCAGCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATATTGATGGTGCAACAAAAGCACGAGCTGGCTTGAATGGACGAAAATTCGGTGGCAATCAAGTAGTGGCTGTCTTTTATTCGGAGAATAAATTTGCTCAGGGAGATTATGAAGGATAG 1113 0.4519 MFQNMFPIATNQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLCAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESILMHAQQQIAIQKLMLQPALVATKVVCLTNAISADELKDDEDYEEIVDDMRTECAKFGTLVNVVIPRPQLNGEPAPGVGKVFLEYADIDGATKARAGLNGRKFGGNQVVAVFYSENKFAQGDYEG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02578 370 CDD RRM2_U2AF65 156 232 - -
Accr1g02578 370 CDD RRM3_U2AF65 268 356 - -
Accr1g02578 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 119 IPR000504 GO:0003723
Accr1g02578 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 234 IPR000504 GO:0003723
Accr1g02578 370 Gene3D - 264 369 IPR012677 -
Accr1g02578 370 FunFam U2 snRNP auxiliary factor large subunit 31 132 - -
Accr1g02578 370 SMART rrm1_1 157 230 IPR000504 GO:0003723
Accr1g02578 370 SMART rrm1_1 270 357 IPR000504 GO:0003723
Accr1g02578 370 SMART rrm1_1 37 115 IPR000504 GO:0003723
Accr1g02578 370 FunFam U2 snRNP auxiliary factor large subunit 264 369 - -
Accr1g02578 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 361 IPR000504 GO:0003723
Accr1g02578 370 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 368 IPR006529 GO:0003723|GO:0005634|GO:0006397
Accr1g02578 370 Gene3D - 147 252 IPR012677 -
Accr1g02578 370 SMART rrm2_1 270 356 IPR003954 GO:0003676
Accr1g02578 370 SMART rrm2_1 37 115 IPR003954 GO:0003676
Accr1g02578 370 SUPERFAMILY RNA-binding domain, RBD 19 122 IPR035979 GO:0003676
Accr1g02578 370 Gene3D - 31 132 IPR012677 -
Accr1g02578 370 PANTHER RNA-BINDING PROTEIN 1 368 - -
Accr1g02578 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Accr1g02578 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 353 IPR000504 GO:0003723
Accr1g02578 370 SUPERFAMILY RNA-binding domain, RBD 157 361 IPR035979 GO:0003676
Accr1g02578 370 FunFam U2 snRNP auxiliary factor large subunit 133 246 - -
Accr1g02578 370 CDD RRM1_U2AF65 35 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02578 Accr-Chr1 61904767 61907761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02578 158 349 Eukaryotic Initiation Factors Gene Family AT1G22760 26.289 4.03e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02578 K12837 - gmx:100793801 700.664