Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02574 ATGGTGAGAGGGAAGGTTCAGATGAAGAGGATAGAGAACCCAGTGCACCGGCAAGTGACCTTTTGTAAGCGCCGAGCTGGTCTCCTGAAGAAGGCTAAGGAGCTTTCTGTGCTTTGCGATGCTGAAATTGGCCTCGTCATTTTCTCCGCCCACGGCAAGCTCTACGAGTTAGCCACCCATGGAACAATGCAAGGGCTGCTGGAGAGGTACACCAAGTTCACACGTGGGACTCAGCTTCAACCTGAACCGCCCATCAATGAATCGTCACATCCTCAGGGTGCGAAAGAGGAGATTCATGTGCTGAAACAAGAAATTGGAACTCTGCAAAAGGGTCTCAGTTACTTGTTTGGAGGGGGGATCGGAACAATGACGGTGGAAGAATTGCATGTTTTGGAGAAGTACCTGGAAATGTGGATTTATCAGATTCGTTCAGTGAAGATGAATAACATGTTAAGTGACATTCAAACTTTGAAGGACAAGGAGGGAATACTCAAAGCTGCAAATAAGTATCTCCAGGATAAGATTGATGAGGAGAATTCTGGAATTACCAACTATGGACAATTTGCTCTTGAGACTACTAACAACACTTGGATGATAGAAGATGAAATATTTCAGTTTTAG 621 0.4509 MVRGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATHGTMQGLLERYTKFTRGTQLQPEPPINESSHPQGAKEEIHVLKQEIGTLQKGLSYLFGGGIGTMTVEELHVLEKYLEMWIYQIRSVKMNNMLSDIQTLKDKEGILKAANKYLQDKIDEENSGITNYGQFALETTNNTWMIEDEIFQF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02574 206 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Accr1g02574 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr1g02574 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr1g02574 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr1g02574 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr1g02574 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr1g02574 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Accr1g02574 206 Pfam K-box region 87 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr1g02574 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Accr1g02574 206 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Accr1g02574 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr1g02574 206 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr1g02574 206 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02574 Accr-Chr1 61841753 61846936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02574 1 206 MADS-box Gene Family AT1G71692 59.174 3.30e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr1g02574 K-box 5.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02574 - - gmx:100783345 277.33