Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02563 ATGGAGCTTGATTTGAACGTGGAGCCCTTGGACCAAACCCCTACCTCAGTGATTGGATTTGATTCTATATTGGATGAGCTAGAATCAACGCATGGACATATAGAAGAGCGCATTAGGCAACTTGAAGCAGTAAACTTGAGATATAGGCAGCGTCAGAGGTGGCGACGGGGTCATGATTCAGTTCAAATAAATAATGTCATCGCAGATATGATGACACCAAATGCTCATGATGAGCACAGGATGCCCCAGGAAGATGTTGGTGTTGCGGTCCAGGAAGGAACAGTTGTGTTAGCGGAATTGACAACAACTACTGCTCAAAATGAACGTAGCTTGCCTAGGGAAGAGGCTGGTGGAGACCAAGAAAGAACAGTCAACAATTGGAAAACGGGCAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTGGGCATGGATCCATATATAGATGAGGCAGTGACCACCACTGGGAATTTTTTTGATTGTAACATTTGTCTGGACATGGCAAGGGATCCGATTTTGACATGCTGTGGTCACTTATTCTGTTGGCCATGCTTTTATCAGGTGTCATATGCTTATTCAAATGTAAGGGAATGCCCTGTTTGTAAGGGAGAAGTCGCTGAAACAGGCATTATTCCAATTTATGGAAATAAAGATGACTCTAGCAACCGTCAGTTGGAATTGAAAGAAAGTGGTTTTACCATCCCTCCTCGGCCCCAAGCACATAGAATTGACAGTTTCAGACAACAGCTCATTAGCAGGGGAGCATCATCTTCTACAATCCAGGAGATTAGTCGAGCTATTGGATCAGCTGCTACTGATAGAACTCGATTTTCAATAAATCAACCTCGTCATACCCAGCCCCAAGCATCACATGGCATGGAGACCGAAGTCAGGCAGAATAATCGTTCCCGTCTACTTTCAAGGTTGTTAGTTGAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAGATTCTGCAATGGATTCTGCTGAAAGATTATTTGGAGACCTTGAAGCATATATTCATCCTCAACAACCTCAACCCATAGGAAGCTCTAGAGAGCTACTACATCCTCTTCCTCATAATAGAGATTCACCTTCTAGCATTGCTGCTACAAACCAATCAGGGAGACATATTCCAGATGTAGCTGCAAGTGATCCTGCGGCCAATGATTCTGTTTCTCCTTTATATATGAACAATGACGCGACTGCTGTAATAGATTCAAGTATCTCGACAGCAGATAACAGTGTACAAGTTAGTTCCATAGAGCCTTCTTCATCTTCTAGCAGAACTGTTGCGGTAGGACTTCCAGATCTTTACACTAGAATTCCAAATGGGCGCAGGAGGAGAAGGCTGAGAAGATGA 1368 0.4349 MELDLNVEPLDQTPTSVIGFDSILDELESTHGHIEERIRQLEAVNLRYRQRQRWRRGHDSVQINNVIADMMTPNAHDEHRMPQEDVGVAVQEGTVVLAELTTTTAQNERSLPREEAGGDQERTVNNWKTGKRNSSHLVAKALGMDPYIDEAVTTTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSYAYSNVRECPVCKGEVAETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQAHRIDSFRQQLISRGASSSTIQEISRAIGSAATDRTRFSINQPRHTQPQASHGMETEVRQNNRSRLLSRLLVEGAASFSSLSSALDSAMDSAERLFGDLEAYIHPQQPQPIGSSRELLHPLPHNRDSPSSIAATNQSGRHIPDVAASDPAANDSVSPLYMNNDATAVIDSSISTADNSVQVSSIEPSSSSSRTVAVGLPDLYTRIPNGRRRRRLRR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02563 455 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Accr1g02563 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 215 IPR013083 -
Accr1g02563 455 Pfam zinc-RING finger domain 161 202 IPR001841 -
Accr1g02563 455 SMART ring_2 161 201 IPR001841 -
Accr1g02563 455 SUPERFAMILY RING/U-box 155 210 - -
Accr1g02563 455 MobiDBLite consensus disorder prediction 344 376 - -
Accr1g02563 455 Coils Coil 24 44 - -
Accr1g02563 455 MobiDBLite consensus disorder prediction 105 127 - -
Accr1g02563 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 115 298 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02563 Accr-Chr1 61780706 61782073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02563 115 267 C3H Transcription Factor Family AT3G58030 40.909 1.49e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02563 - - pcin:129296436 718.768