Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02562 ATGGAGCTTGATTTGAACGTGGAGCCCTTGGACCAAACCCCTACCTCAGTGATTGGATTTGATTCTATATTGGATGAGCTAGAATCAACGCATGGACATATAGAAGAGCGCATTAGGCAACTTGAAGCAGTAAACTTGAGATATAGGCAGCGTCAGAGGTGGCGACGGGGTCATGATTCAGTTCAAATAAATAATGTCATCGCAGATATGATGACACCAAATGCTCATGATGAGCACAGGATGCCCCAGGAAGATGTTGAAAGAACAGTCAACAATTGGAAAACGGGCAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTGGGCATGGATCCATATATAGATGAGGCAGTGACCACCACTGGGAATTTTTTTGATTGTAACATTTGTCTGGACATGGCAAGGGATCCGATTTTGACATGCTGTGGTCACTTATTCTGTTGGCCATGCTTTTATCAGGTGTCATATGCTTATTCAAATGTAAGGGAATGCCCTGTTTGTAAGGGAGAAGTCGCTGAAACAGGCATTATTCCAATTTATGGAAATAAAGATGACTCTAGCAACCGTCAGTTGGAATTGAAAGAAAGTGGTTTTACCATCCCTCCTCGGCCCCAAGCACATAGAATTGACAGTTTCAGACAACAGCTCATTAGCAGGGGAGCATCATCTTCTACAATCCAGGAGATTAGTCGAGCTATTGGATCAGCTGCTACTGATAGAACTCGATTTTCAATAAATCAACCTCGTCATACCCAGCCCCAAGCATCACATGGCATGGAGACCGAAGTCAGGCAGAATAATCGTTCCCGTCTACTTTCAAGGTTGTTAGTTGAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAGATTCTGCAATGGATTCTGCTGAAAGATTATTTGGAGACCTTGAAGCATATATTCATCCTCAACAACCTCAACCCATAGGAAGCTCTAGAGAGCTACTACATCCTCTTCCTCATAATAGAGATTCACCTTCTAGCATTGCTGCTACAAACCAATCAGGGAGACATATTCCAGATGTAGCTGCAAGTGATCCTGCGGCCAATGATTCTGTTTCTCCTTTATATATGAACAATGACGCGACTGCTGTAATAGATTCAAGTATCTCGACAGCAGATAACAGTGTACAAGTTAGTTCCATAGAGCCTTCTTCATCTTCTAGCAGAACTGTTGCGGTAGGACTTCCAGATCTTTACACTAGAATTCCAAATGGGCGCAGGAGGAGAAGGCTGAGAAGATGA 1266 0.4297 MELDLNVEPLDQTPTSVIGFDSILDELESTHGHIEERIRQLEAVNLRYRQRQRWRRGHDSVQINNVIADMMTPNAHDEHRMPQEDVERTVNNWKTGKRNSSHLVAKALGMDPYIDEAVTTTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSYAYSNVRECPVCKGEVAETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQAHRIDSFRQQLISRGASSSTIQEISRAIGSAATDRTRFSINQPRHTQPQASHGMETEVRQNNRSRLLSRLLVEGAASFSSLSSALDSAMDSAERLFGDLEAYIHPQQPQPIGSSRELLHPLPHNRDSPSSIAATNQSGRHIPDVAASDPAANDSVSPLYMNNDATAVIDSSISTADNSVQVSSIEPSSSSSRTVAVGLPDLYTRIPNGRRRRRLRR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02562 421 SUPERFAMILY RING/U-box 121 176 - -
Accr1g02562 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 87 265 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr1g02562 421 Pfam zinc-RING finger domain 127 168 IPR001841 -
Accr1g02562 421 ProSiteProfiles Zinc finger RING-type profile. 127 168 IPR001841 -
Accr1g02562 421 Coils Coil 24 44 - -
Accr1g02562 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 181 IPR013083 -
Accr1g02562 421 SMART ring_2 127 167 IPR001841 -
Accr1g02562 421 MobiDBLite consensus disorder prediction 310 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02562 Accr-Chr1 61780706 61782073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02562 84 233 C3H Transcription Factor Family AT3G58030 41.722 1.89e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02562 - - pcin:129296436 656.366