Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02561 ATGGAGCTTGGTTTGAGCTTGGGAGATCATGCTTCAAAGCCTTCTGAAGCCTCCAGCCTCCTGGGATTAGGCTTCACCACTTTATCCATTGGTCCTTTTAGTACCAAAGCATCAGATCAACAAGAACCAGAGGAAAGAGAAGCAAAAAAGCAAAAGGGAAAGCAGAGTATTGAAGAAAACGAAGATAGACTTGAATATGTTCAGCTCGATCTTCTCCCTCACACTCCAGTCGCTGTTTCTCGCACTAACCCACCTTCTCAAATTTCATTTCCATGGCCTCCGTCTGAAAATGGCAGTTCTCCTAGGGGCGTGGATATGAATAGATTGCCACCGCCGGTGGCGGCGGCTGAGGAAGATGAGGCGGCGATGTCGTCGTCTCCGAACAGCGCTGCGTCGTCGTTTCAGATGGATCTCAGTGTGTTTAACATAGGAGGGAGTAGTATTAGTGGCTGTAAGAGGGATTATGAAGGAGAGGTATATTATGATCAAAGGGCTGGTTCTTCAAGAGCAAGCGATGAAGATGACAACGTTGGTAGTACGAGGAAGAAGCTAAGGCTGTCCAAGGAACAATCAGCTTTTCTCGAAGAGAGCTTCAAAGAACACAGCACCCTTAACCCAAAACAGAAACTTGCTCTTGCAAAACAGCTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAGGTAGACTGTGAGTACTTGAAGAGGTGTTGTGAGACATTAACGGAAGAGAATAGAAGGCTTCACAAAGAGCTTCAAGAATTGAGAGCTTTGAAGACTAATTCAAACCCATTCTTCATGCAATTACCAGCCACCACCTTGACCATGTGTCCCTCTTGTGAGCGAGTCGCCACCAACAATTCCACCACCACTTCCGCCACGGCCACGGCCACCGCCACCACCCTAGCCGCCGCCTCCGCCACTACGGTTGCTGTAGCTTCCTCTGCAAGTCCTTCTGCGACCAAAGTCACTGAAACAAGAGCCGCCATTGAATCCAAAGCCATTGGATTCCCTCTAAGCAAACCGAAGTTCTATCCCTTTGCTCACACCAAGCCCCACCATCACCACCCATCCACGCCCTCTTGA 1122 0.4893 MELGLSLGDHASKPSEASSLLGLGFTTLSIGPFSTKASDQQEPEEREAKKQKGKQSIEENEDRLEYVQLDLLPHTPVAVSRTNPPSQISFPWPPSENGSSPRGVDMNRLPPPVAAAEEDEAAMSSSPNSAASSFQMDLSVFNIGGSSISGCKRDYEGEVYYDQRAGSSRASDEDDNVGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTNSNPFFMQLPATTLTMCPSCERVATNNSTTTSATATATATTLAAASATTVAVASSASPSATKVTETRAAIESKAIGFPLSKPKFYPFAHTKPHHHHPSTPS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02561 373 MobiDBLite consensus disorder prediction 167 184 - -
Accr1g02561 373 Pfam HD-ZIP protein N terminus 95 134 IPR006712 GO:0005634
Accr1g02561 373 ProSitePatterns 'Homeobox' domain signature. 212 235 IPR017970 GO:0000981|GO:0006355
Accr1g02561 373 FunFam Homeobox-leucine zipper protein 18 166 242 - -
Accr1g02561 373 SUPERFAMILY Homeodomain-like 166 238 IPR009057 -
Accr1g02561 373 MobiDBLite consensus disorder prediction 165 184 - -
Accr1g02561 373 CDD homeodomain 181 238 IPR001356 GO:0003677
Accr1g02561 373 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 312 - -
Accr1g02561 373 MobiDBLite consensus disorder prediction 77 110 - -
Accr1g02561 373 ProSiteProfiles 'Homeobox' domain profile. 177 237 IPR001356 GO:0003677
Accr1g02561 373 Gene3D - 185 235 - -
Accr1g02561 373 SMART HOX_1 179 241 IPR001356 GO:0003677
Accr1g02561 373 SMART halz 237 281 IPR003106 GO:0006355|GO:0043565
Accr1g02561 373 MobiDBLite consensus disorder prediction 39 62 - -
Accr1g02561 373 Coils Coil 250 273 - -
Accr1g02561 373 Pfam Homeodomain 181 235 IPR001356 GO:0003677
Accr1g02561 373 MobiDBLite consensus disorder prediction 79 102 - -
Accr1g02561 373 MobiDBLite consensus disorder prediction 30 62 - -
Accr1g02561 373 Pfam Homeobox associated leucine zipper 237 271 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02561 Accr-Chr1 61747283 61748739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02561 102 294 Homeobox Transcription Factor Family AT3G60390 59.024 7.56e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr1g02561 Homeodomain 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02561 K09338 - qsa:O6P43_029477 364.385