Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02522 ATGACAGATCCTCATCAGTCTAATTTCTTCTCAAAGTGCTTCAACTTTGTCCCCCTCCATCCTCACTTGTACTCTCCCAATTCCTACAGCTCCTTCTCCATTCAGTTCCCTCCTCCTCCTCCTCCTCCTGCAAGAGAGGCCCTTCCTCTGCTGAACAATCTCAATCTCCTCACTAACCACTCCAGCCAAACACCTACTCATACGCATGTACAGCCCTCCACCAATAATAACAAGGAACCATTAATTCCACACAACAAAGAGTCTAGTTGTGACGAAACTGTCACTGTTGCTCTGCGCATAGGACTTCCCTCCATGACTTCTGCTACCACCACAAGCAGTAGCAGTAGTATTACTCAGATTGAAACGACAACCACCACCATGGACAAAGATGTCGTTTCTGGTGGTCACTGCTCTTTTGATGCCTTGAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGTCATGTCTGCTCCAAAACCTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAGTACAGGAAGGGACCAGATTCTTTAAGAGGAACACAACCTACGGCAATGCTAAGGCTTCCATGTTTCTGTTGTGTACCAAACTGCAAGCACAACATAGACCACCCAAGGGCAAGGCCTCTTAAGGATTTCAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGAACCAAACCCTACTTGTGCAGAAAATGCAACAAGGCTTTTGCCGTGAAAGGTGACTGGAGGACACATGAGAAGAATTGTGGCAAAATATGGTATTGCCTATGTGGTTCTGACTTTAAACACAAGAGGTCACTTAAGGACCACATTAGGGCTTTTGGCCATGGCCATGGTGGAGCTTTTCCTGGCGGCGCTGGCTTTGATAATAATTGCTTGCAGGAAGAAGATGAAGAAGAAGCTAATTCTGAGATTGAACATGATAATAATAATGGCCCGACAACTCCATGTGAAAATATGTATAAAAGCTCAAGTCTTTAA 1038 0.4528 MTDPHQSNFFSKCFNFVPLHPHLYSPNSYSSFSIQFPPPPPPPAREALPLLNNLNLLTNHSSQTPTHTHVQPSTNNNKEPLIPHNKESSCDETVTVALRIGLPSMTSATTTSSSSSITQIETTTTTMDKDVVSGGHCSFDALNKGQYWIPTPSQILIGPTQFSCHVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCVPNCKHNIDHPRARPLKDFRTLQTHYKRKHGTKPYLCRKCNKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHGGAFPGGAGFDNNCLQEEDEEEANSEIEHDNNNGPTTPCENMYKSSSL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02522 345 FunFam Zinc finger protein WIP2 215 297 - -
Accr1g02522 345 MobiDBLite consensus disorder prediction 316 345 - -
Accr1g02522 345 MobiDBLite consensus disorder prediction 58 89 - -
Accr1g02522 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 302 IPR013087 -
Accr1g02522 345 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Accr1g02522 345 Gene3D Classic Zinc Finger 201 294 - -
Accr1g02522 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Accr1g02522 345 SMART c2h2final6 246 266 IPR013087 -
Accr1g02522 345 SMART c2h2final6 162 184 IPR013087 -
Accr1g02522 345 SMART c2h2final6 272 295 IPR013087 -
Accr1g02522 345 MobiDBLite consensus disorder prediction 326 345 - -
Accr1g02522 345 SUPERFAMILY beta-beta-alpha zinc fingers 230 266 IPR036236 -
Accr1g02522 345 SUPERFAMILY beta-beta-alpha zinc fingers 154 184 IPR036236 -
Accr1g02522 345 Gene3D Classic Zinc Finger 161 184 - -
Accr1g02522 345 PANTHER ZINC FINGER PROTEIN WIP2 26 329 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02522 Accr-Chr1 61309030 61311895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02522 94 330 C2H2 Transcription Factor Family AT3G57670 62.879 8.20e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g02522 zf-C2H2_6 0.00018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02522 - - qsa:O6P43_001350 374.4