Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02519 ATGAATGATGGGAGACCAATAGAGTTTCATTACATAAACCCTGGTTTTTCGTATACTGCTACAGAAAGCTTCATGGAGTTCTTCGACGGACCGCCGGTGGACTATGATCACGCTGGACCAATTCCTTATCAGGAGTACTGGTCAATGAACATGAACCCTTACAAGTTTGGATTGTCTGGTCCGGATAGTGCATCTTATTATGGTTCTTACGAAGAAGATAATAGTTTCCCAAGATTGGAGGTCGACAGGGGAGAGTGGGAATATCCTTTAACAACGACCATTGAGGAGCCGACCACAACAGACTCTCCATCCAGAAGGGACGAAGTGAATAATGGCACGCAGACCATCCCTGAAGAATCCAGCCCAAATCGTCATGATTCCAGTACTGCTCCGGTTATGTGGCAAGACCATATCGATCCAGATAATATGACTTATGAGGAATTGTTGGACTTGGGTGAGGCAGTTGGAACTCAGAGCCGAGGTCTTTCTCAAGAACTTATTGATTTACTCCCAACCTCGAAGTACAAATTTGGAAGCTTATTTAAAAGAAAAAATTTTGGGAAAAGGTGCGTTATTTGTCAGATGACGTATAGAAGAGGTGACCAACAAATGAAATTGCCGTGCAGGCATGTTTACCATGGTGAATGCATCACCAAATGGCTCAGCATTAACAAGAAATGCCCAGTTTGCAACGTTGAGGTATTTGGTGATGAATCAACACATTAG 726 0.4325 MNDGRPIEFHYINPGFSYTATESFMEFFDGPPVDYDHAGPIPYQEYWSMNMNPYKFGLSGPDSASYYGSYEEDNSFPRLEVDRGEWEYPLTTTIEEPTTTDSPSRRDEVNNGTQTIPEESSPNRHDSSTAPVMWQDHIDPDNMTYEELLDLGEAVGTQSRGLSQELIDLLPTSKYKFGSLFKRKNFGKRCVICQMTYRRGDQQMKLPCRHVYHGECITKWLSINKKCPVCNVEVFGDESTH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02519 241 SUPERFAMILY RING/U-box 189 235 - -
Accr1g02519 241 SMART ring_2 190 230 IPR001841 -
Accr1g02519 241 MobiDBLite consensus disorder prediction 92 130 - -
Accr1g02519 241 Pfam Ring finger domain 189 231 IPR001841 -
Accr1g02519 241 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Accr1g02519 241 SMART ringv_2 189 231 IPR011016 GO:0008270
Accr1g02519 241 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 237 IPR033276 GO:0004842|GO:0016567|GO:0046621
Accr1g02519 241 FunFam E3 ubiquitin ligase BIG BROTHER 152 235 - -
Accr1g02519 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02519 Accr-Chr1 61262099 61265660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02519 3 241 C3H Transcription Factor Family AT3G63530 53.846 1.28e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02519 K19045 - gmx:100785290 377.096