Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02506 ATGTTTCCAAAAATCCCTCTTCCCTCCATCCTCCTTATCATTTCTCTGATCTCATTACCCTTTTGTTTTGGCTCTCACATTCATCACAAATCTCTCAATGCTCCAAAACATGAACACTTTGGCCTCATGAGAAGATCTCACAGAGCCAGTAAGGTTCCTTCGAGTTCTAATCAAGCAACACTTAGTGTTGATGACTATGGAGCCAAAGCCAGCGGAAACGATGACTCTGAGGCCTTCATGAATGCTTGGAAAGAGGCTTGTTCTTCTGGGTCTACTCTTGTTGTCCCTGAGAATAAGGTCTATCATCTTAAGCCTGTGAAATTTTCAGGTCCATGCCAGCCAGATACTGCGTTTATGGTGTACGGAACAATCATGGCGTGGTCTGACATGTCTGCGTATGAAGAAGATCGAAGGTTCTGGATTCAGTTCGTAGGAATCAAGAACTTCAGAGTTGATGGTGCAGGTAAAGGCACTATCGATGGCAATGGCAAGATATGGTGGCAACATTCCTGCAAAACCAACAAAAACCTCCCATGCAAGGATGCACCAACTGCTGTAACTTTCAGCCAATGCAACAACTTGATCGTGCAAAACTTGAAATTCCAGGATCCACAGCAAATGCATATGAATTTTGATCAAAGCGTGAATGTTAGAGTTTCGAGCCTGATAGTGCAAGCCCCAGGAAACAGCCCTAATACTGATGGGATTCATGTGACAGGAACACAGAATATGTTTATAAGCAACAGTGTCATTGGCACAGGCGATGACTGTATTTCAATAGTAAGTGGGTCTAGCAATGTTAGAGCTACAGACATCACCTGTGGACCAGGACATGGAATCAGTATTGGGAGTTTAGGAGCAGATGATGCAGAAGCAGAAGTGTCGAATGTGGTAGTGGACGGAGCAACATTGATAGGAACAATGAATGGGGTGAGAATTAAGACTTGGCAGGGAGGGTCTGGATATGCAAAAGGCATAAAGTTTATGAATATAGACATGAGAAATGTGAGCAATCCCATCATCATTGATCAAAACTACTGTGATGAAAAACAACCATGCCACCAACAGGGATCAGCTGTGCAACTGAGCGATGTGGTGTATCAGAACATAAGAGGAACAAGTGCATCAGAAGTGGCCATCAAATTTGATTGCAGCCAAACAGAGCCTTGCAGAGACATCACCGTGGAAGATGTGTTCTTGAAAACACAAGGACGTGGAGAAACAGTTGCTACTTGTGACAACGTTAGATTTGTCAACCGAGGAAACATCGTCCCTCAGTGTTCTTGA 1287 0.4375 MFPKIPLPSILLIISLISLPFCFGSHIHHKSLNAPKHEHFGLMRRSHRASKVPSSSNQATLSVDDYGAKASGNDDSEAFMNAWKEACSSGSTLVVPENKVYHLKPVKFSGPCQPDTAFMVYGTIMAWSDMSAYEEDRRFWIQFVGIKNFRVDGAGKGTIDGNGKIWWQHSCKTNKNLPCKDAPTAVTFSQCNNLIVQNLKFQDPQQMHMNFDQSVNVRVSSLIVQAPGNSPNTDGIHVTGTQNMFISNSVIGTGDDCISIVSGSSNVRATDITCGPGHGISIGSLGADDAEAEVSNVVVDGATLIGTMNGVRIKTWQGGSGYAKGIKFMNIDMRNVSNPIIIDQNYCDEKQPCHQQGSAVQLSDVVYQNIRGTSASEVAIKFDCSQTEPCRDITVEDVFLKTQGRGETVATCDNVRFVNRGNIVPQCS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02506 428 Pfam Glycosyl hydrolases family 28 91 416 IPR000743 GO:0004650|GO:0005975
Accr1g02506 428 SUPERFAMILY Pectin lyase-like 56 427 IPR011050 -
Accr1g02506 428 Gene3D - 44 424 IPR012334 -
Accr1g02506 428 PANTHER - 58 415 - -
Accr1g02506 428 SMART pbh1 214 240 IPR006626 -
Accr1g02506 428 SMART pbh1 241 262 IPR006626 -
Accr1g02506 428 SMART pbh1 323 344 IPR006626 -
Accr1g02506 428 SMART pbh1 294 315 IPR006626 -
Accr1g02506 428 FunFam Polygalacturonase QRT2 46 428 - -
Accr1g02506 428 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02506 Accr-Chr1 60921772 60924587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02506 1 428 Glycoside Hydrolase AT3G07970 53.139 1.54e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02506 K01184 - gmx:100799134 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g02376 1 59309314 59310326 Accr1g02506 1 60921772 60924587 CCT
Accr1g02506 1 60921772 60924587 Accr1g02506 1 60921772 60924587 ECH