LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g02387	ATGTCTTTACAGCAGCATAATAATGTTGAGCTCAAGGGTGTTTCAGCTGTAGGGTCAGGATGCTGCCTTTATGATCTTTTGTGTGCTGAATCTCCAAATTTGCAATCCCAAAATAATCAGTGGCAGTCTTCTTCTGATACTCTAGAAAGGTTAGAGAAGTTGATGCACGAAGCTGGGAACAATTATTGTGCTGATTGTGGGTCTCCAGAGCCAAAATGGGTATCTTCAAATATTGGAGCCTTTGTTTGCATCAAGTGCTCTGGCATACATAGAAGCCTAGGAGTCCAAATATCAAAGGTTCTATCATTGAGCCTAGATCAATGGACAGATGATGAAGTCACTGCGCTGGAAGAGTTGGGAGGGAATGCATTGGTAAATAAAAAGTATGAAGCTTGCATCCCCGGTTATATAAAGAAGCCGAAGCCGACTTCCTCCATTGAGGAGCGTGAAGACTTTATCAGGAGAAAATACGAGCTGCTGCAATTTATGGAGTGTGATGAACAATTGTCCTGCCCCTTTATACCACATCAGAGCAGTTCCTCATGCATCATTTCTCACCTAGACAAGAAAAATTACAACAAACTAGCATACAAACATCGTATTGGGAGCACATTTCGTAACAGTTGGGTGAGAAAAGAACCTGATAATAATAATAATAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAATGTTGTCAAAGGCACTAACTTGGCTGTCCGTGATGTAATGACTAGTGATCCTTATGTCATTCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAACAATTTAAATCCTGTATGGAATGAGAGCTTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCTTACTCGCAGCTGCAAAAGCCTACGAGAAATCTAGAGCCAACAAGTCCATGGAGATCGAGAAATGGGTAGCAGGTTTGGACAACAACCTCCTTAGAGATGGCGTCATCTCCCTCGAAGATGGGAAGATCAGACAAGAAATATCTGTAAAGCTGCAGAATGTGGAGAGAGGAGAGCTGGAAGTTGAGCTTGAGTGTCTTCCTCTCACTCAATAG	1179	0.4156	MSLQQHNNVELKGVSAVGSGCCLYDLLCAESPNLQSQNNQWQSSSDTLERLEKLMHEAGNNYCADCGSPEPKWVSSNIGAFVCIKCSGIHRSLGVQISKVLSLSLDQWTDDEVTALEELGGNALVNKKYEACIPGYIKKPKPTSSIEEREDFIRRKYELLQFMECDEQLSCPFIPHQSSSSCIISHLDKKNYNKLAYKHRIGSTFRNSWVRKEPDNNNNKASKKSNSLAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAAAKAYEKSRANKSMEIEKWVAGLDNNLLRDGVISLEDGKIRQEISVKLQNVERGELEVELECLPLTQ	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g02387	392	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	233	327	IPR035892	-
	Accr1g02387	392	Gene3D	Arf GTPase activating protein	29	170	IPR038508	-
	Accr1g02387	392	Gene3D	C2 domain	235	392	IPR035892	-
	Accr1g02387	392	FunFam	stromal membrane-associated protein 1 isoform X1	33	168	-	-
	Accr1g02387	392	ProSiteProfiles	C2 domain profile.	219	334	IPR000008	-
	Accr1g02387	392	Pfam	C2 domain	237	325	IPR000008	-
	Accr1g02387	392	PRINTS	HIV Rev interacting protein signature	100	121	IPR001164	GO:0005096
	Accr1g02387	392	PRINTS	HIV Rev interacting protein signature	60	79	IPR001164	GO:0005096
	Accr1g02387	392	PRINTS	HIV Rev interacting protein signature	79	96	IPR001164	GO:0005096
	Accr1g02387	392	SMART	arf_gap_3	49	170	IPR001164	GO:0005096
	Accr1g02387	392	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	45	170	IPR001164	GO:0005096
	Accr1g02387	392	Pfam	Putative GTPase activating protein for Arf	50	164	IPR001164	GO:0005096
	Accr1g02387	392	SMART	C2_3c	237	332	IPR000008	-
	Accr1g02387	392	CDD	C2_ArfGAP	235	379	-	-
	Accr1g02387	392	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	42	392	IPR044518	GO:0005096\|GO:0005543
	Accr1g02387	392	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	234	392	-	-
	Accr1g02387	392	SUPERFAMILY	ArfGap/RecO-like zinc finger	49	163	IPR037278	-
	Accr1g02387	392	CDD	ArfGap	51	157	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g02387	Accr-Chr1	59446318	59450788	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g02387	50	392	C2H2 Transcription Factor Family	AT4G21160	48.105	2.55e-117	343

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g02387	K12486		-	gmx:100799376	543.888