Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02377 ATGGACGATTCCCTTTCCGACGATAAGCTTTGTGGCTTCCTATTTGCTGTTCTCGCGGTGACTCCTTCGCAACCCGACCCGTGTCCCAGTTTAGGCTTCAAAGAGCGCTGCAACCTCTTTGGCGACAGTTCTAATGCCGTCGGATTCAGGTCCGAGAATGGCGTCGTGTTAGTTCCGGTGGATTCGGCGGCTAAGCAAAATGAGGGCGGGAGCGCGTCTGCTTCTGATTCAGCGCAGTGCCAAGTGGTGGGGAGGGAATCTAGGATTGATTACGATGGCAATGCTCTTGTTTCGACTACGCAAAAGAAGGGCAATGTAAAAAGGAAAATTCGGGTGGTATCGGGGAGTGGTAGCTTGAGGAAGAAGAGGATGACGCAGATTGGGATGGTCAATGGGACTGTTAGTGTGATTCACCAGCTTCACGCTTTGGTTAGAAAAAAGTGCTTAAAGATTGATGCTCGAGTGATTTTGGTTGACCTTGGGGACTGTGGCGAGGCTAGAGCAGTGGTACTGGTCGATGTGTATCTTCCAATTGCATTATGGAGTGGCTGGCAGTTTCCAAAATCCGGGTCCACTGCTGGTGCTCTTTTTCGGCATTTGAGGTGTGACTGGGATGAGAGAAGATCAGTTCTTTCTTGCTTAAACTATATTAGGAAGATTCAGGGGGCTTGTGAGAGTATTTGGAACCTTTGTGACTGTCATGTATTTGGGTGCAAACTCCACTACCAAGCAAGAGATTCTTCAAAGAATAGTCTATTTGAACTCCATGAGATTTTTAAGAGTGTACCTGGTGTAGGAAAAGAGCGGAAGCCTGATAATTCCGGGATAGTGCCCTTGAATGACTCTCAGAGATGTGGAATTTGGGAGTTATCTGACGATATTTTAACAAAAATTCTAGCTCCCCTAAGCCCAATGGACATTGCTAGGGTTTCTGCAACTTGTCGTCATATGAGATTTTTGGCCGCTTCAATAATGCCATGTACTAAGTTGAAACTGTTTCCCCACCAGCAGACAGCTGTTGAGTGGATGTTGCATCGGGAGCGAAATGCTGAACGCTTGGCACATCCTTTGTATGTTTCTTTTTCAACAGAGGATGGCTTTGTTTTCCATATGAATATTGTATCTGGTGAAATAGTCATTGGGGAAGCCCCCACCATTAAAGATTTTTGTGGTGGAATGTTCTGTGACGAGCCTGGTTTGGGTAAGACTGTAACAACTCTTTCTCTTATATTGAAGACGCAAGGTACATTGGCAGATCCACCAGATGGATCAAATGTGGTTTGGTGTAGCCATAATGGTAATCTTAAATGTGGTTATTATGATATTGTTGGTAGTTACATAATTGACAGTAGTAATTTGGGGAAGAGGGGCATATGCCAGGATGCTTGGAATAATGAGAATCATGATCACTCCTCCAAAAGAGCTAGATTGAAGATTCCTGCAGAGAAAACCAGTGGACTTAATAAGAAATGTTCTGGTGAAGAGAAAAAATCACCCATAGGCGAATACTCTGAGCAGCCAATGGCTGCAAGTCGATCTTCTTGGGGTTTGAGTTCCATAAAGAAAAATCTATGTGCAACTTTTGAAGAGGGAGCTGGGCATTCCAAAGAAAGAAAAGATAGTGTAAACTCTTTGAAACTGGAACATGCATCAAGTGCTGAAACACGTATATCCGAGAAAATGCCAGTCAATACTTCATTTGGACATGAGAAGGGTTGCGAGAGACCTGAGAAGCCTACATTGGATTCTGTTGAGTGCAATGACACTTGGATTCAGTGTGATGCTTGCCAGAAATGGAGAAAGCTTGCAGATTCCAGTATGGCTAATACTAATGCAGCGTGGTTTTGTAGTATGAACACTGATCCTTTGTATCAGAGTTGTAGCATCCCAGAACAACCCTGGCATAATAGCTGTGAAATAACTTATTTACCAGGATTTCATGTGAAAGGTAGTGCAGGGGGTGAGAAGAAGAATGTTTCATTTTTCACTGGTGTACTTAAGGAGCATTACCCAATGATAAATTCTGAGACAAAGAAAGCCCTGACTTGGTTGGCCAGACTTCCGCCTGACAAGCTTTCTGAAATGGAAATAAATGGCATAAGGGGTCCAGTTTTGAGCACCTTTGTTGTGTCTACTCGATATGTTAATCCATACCACAAGATATTTCAGGCATTTGGTCTCATTAAGAAGTTAGAAAAAGGTGTAAACAAGTGGTACTACCCACCAAATTTAAATAATAATTTAGCTTTTGATGTAACTGCCCTTGGCATGGCTCTGTGTGAGCCATTAGATTCATTTAGGTTATACTTGTCGAGAGCAACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCATGTCAAACATAGTCAACTGCGAGTTTATGTTTGGAATGATACTTGGAAGTGCAAGCCGTCTGTGCACAGTCTGGCATGGGATTATGATGTTATCATCACTACATTTAGTCGTCTCAGTGCTGAGTGGAGCACCTGTAAGAGAAGTGTTCTAATGCACGTCCATTGGCTGAGGATCATATTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGACAGCTTCAAATCGTTGGATGCTAACAGGAACACCAACACCTAACACTCCTAAAAGTCAACTATCGCATTTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCCAAAGTCCTGGGAAGTTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGGAGGTTTCGTCTGTTGCAATTACTTCGTAACTGCATGATTAGTGCAAGGAAGACAGACTTGCATAATATTCCCCCATGCATCAAAAAAGCTGTTTTTGTAGATTTTACTGAGGATCATGCCAGAAGTTATAATGAATTGGTATTAACAGTTCGTCGTAATTTATTAATGGCTGATTGGAACGATTCTTCACACATTGAGAGTCTACTGAATTCAAAACAATGGAAATTTAGGGCTGAAACTATAAAAAACGTCAGGCTCTCGTGCTGTGTTGCTGGACATATTAAAGTTACACACACAGGTGAAGATATTCAGGAAACAATGGATATGTTAGTAGAAGGTGGTATGGATCCTGATTCAGCTGAGTATTCCTCTATAAAATATAATCTACTTTGTGGAGGCTGGTGTGTCAGGTGCAAGGAATGGTGCCGCCTGCCCTTTATTACACCATGTTGGCATCTGTTGTGCCTTGACTGTGTCGCTTTAGACAGTACGAAGTGTACTTATCCTGGATGCAATAAATTATATGAGATGCAGAATCCTGATTCACTGGCCCGCCCAGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAACAGGATGCTTGGGATCCTGATTGGCAATCAACATCTAGTAGCAAGGTATCCTATCTTGTCCAGAGATTGAACACTTTACAAGAATCCAATAAGAAGGGCTACTATTCTAGCAATGATCAGGTTCTCGCTGAGAGCAGTTGCCCTCTGGTGATGGGAGATGTAAAATCATCGTTCCAGCAATGCCCTCCAAGCACTGAACCCAATAATATGCCTGAGAAAGTTATTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATTAAATATGCTGGGATGTATAGTCCAATGCCTTTAACCAACAAGAAGAAGTCACTGGCCACATTCCAGCATGATCCCGGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACACTTGTTTTTAATGGAACCAATCTGGGATAAAAGCATGGAGGAACAGGTAATTAGTCGTGCTCATCGCATGGGTGCTTGTCGTCCTATTCATGTGGAAACATTAGCGATGCGGGGTACAATTGAAGAGCAAATGCTTGAATTTTTACAGGATGCTGATAGAAGAAGAAACTCCCCTAGTGCTGTTGTCCAATCTAATGACGGTAGAAAATTCCCAACTAAAGGTGTCATCCAATTTGAAGAAGGGGTACGAGGACGTTCTTTGCATGATTTTGCTGAAAATAGTTATCTACTGAATCTTAGATTTGCGAACTCCAATCCTAATGCCGTAGAAGGTGTCTGA 4188 0.4245 MDDSLSDDKLCGFLFAVLAVTPSQPDPCPSLGFKERCNLFGDSSNAVGFRSENGVVLVPVDSAAKQNEGGSASASDSAQCQVVGRESRIDYDGNALVSTTQKKGNVKRKIRVVSGSGSLRKKRMTQIGMVNGTVSVIHQLHALVRKKCLKIDARVILVDLGDCGEARAVVLVDVYLPIALWSGWQFPKSGSTAGALFRHLRCDWDERRSVLSCLNYIRKIQGACESIWNLCDCHVFGCKLHYQARDSSKNSLFELHEIFKSVPGVGKERKPDNSGIVPLNDSQRCGIWELSDDILTKILAPLSPMDIARVSATCRHMRFLAASIMPCTKLKLFPHQQTAVEWMLHRERNAERLAHPLYVSFSTEDGFVFHMNIVSGEIVIGEAPTIKDFCGGMFCDEPGLGKTVTTLSLILKTQGTLADPPDGSNVVWCSHNGNLKCGYYDIVGSYIIDSSNLGKRGICQDAWNNENHDHSSKRARLKIPAEKTSGLNKKCSGEEKKSPIGEYSEQPMAASRSSWGLSSIKKNLCATFEEGAGHSKERKDSVNSLKLEHASSAETRISEKMPVNTSFGHEKGCERPEKPTLDSVECNDTWIQCDACQKWRKLADSSMANTNAAWFCSMNTDPLYQSCSIPEQPWHNSCEITYLPGFHVKGSAGGEKKNVSFFTGVLKEHYPMINSETKKALTWLARLPPDKLSEMEINGIRGPVLSTFVVSTRYVNPYHKIFQAFGLIKKLEKGVNKWYYPPNLNNNLAFDVTALGMALCEPLDSFRLYLSRATLIVVPANLVDHWKTQIEKHVKHSQLRVYVWNDTWKCKPSVHSLAWDYDVIITTFSRLSAEWSTCKRSVLMHVHWLRIILDEGHTLGSSLNLTNKLQMAISLTASNRWMLTGTPTPNTPKSQLSHLQPLLRFLHEEAYGLNPKSWEVGILKPFEAEMEEGRFRLLQLLRNCMISARKTDLHNIPPCIKKAVFVDFTEDHARSYNELVLTVRRNLLMADWNDSSHIESLLNSKQWKFRAETIKNVRLSCCVAGHIKVTHTGEDIQETMDMLVEGGMDPDSAEYSSIKYNLLCGGWCVRCKEWCRLPFITPCWHLLCLDCVALDSTKCTYPGCNKLYEMQNPDSLARPENPNPKWPVPKDLIELQPSYKQDAWDPDWQSTSSSKVSYLVQRLNTLQESNKKGYYSSNDQVLAESSCPLVMGDVKSSFQQCPPSTEPNNMPEKVIIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMPLTNKKKSLATFQHDPGCMALVMDGSAALGLDLSFVTHLFLMEPIWDKSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQDADRRRNSPSAVVQSNDGRKFPTKGVIQFEEGVRGRSLHDFAENSYLLNLRFANSNPNAVEGV 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02377 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1333 IPR027417 -
Accr1g02377 1395 Gene3D - 582 635 - -
Accr1g02377 1395 Pfam CW-type Zinc Finger 589 632 IPR011124 GO:0008270
Accr1g02377 1395 CDD RING-HC 1068 1092 - -
Accr1g02377 1395 SMART fbox_2 290 330 IPR001810 GO:0005515
Accr1g02377 1395 SMART helicmild6 1225 1307 IPR001650 -
Accr1g02377 1395 Gene3D - 1104 1364 IPR027417 -
Accr1g02377 1395 ProSiteProfiles Zinc finger CW-type profile. 584 635 IPR011124 GO:0008270
Accr1g02377 1395 CDD F-box_SF 289 321 - -
Accr1g02377 1395 Pfam SNF2-related domain 335 1003 IPR000330 GO:0005524|GO:0140658
Accr1g02377 1395 SMART ultradead3 328 919 IPR014001 -
Accr1g02377 1395 CDD SF2_C_SNF 1212 1317 - -
Accr1g02377 1395 MobiDBLite consensus disorder prediction 486 507 - -
Accr1g02377 1395 Pfam Helicase conserved C-terminal domain 1209 1307 IPR001650 -
Accr1g02377 1395 SUPERFAMILY F-box domain 281 323 IPR036047 GO:0005515
Accr1g02377 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 945 IPR027417 -
Accr1g02377 1395 CDD DEXDc_SHPRH-like 762 946 - -
Accr1g02377 1395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 905 IPR014001 -
Accr1g02377 1395 ProSitePatterns Zinc finger RING-type signature. 1083 1092 IPR017907 -
Accr1g02377 1395 Gene3D - 754 950 IPR038718 -
Accr1g02377 1395 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1193 1351 IPR001650 -
Accr1g02377 1395 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 109 1335 - -
Accr1g02377 1395 Pfam F-box domain 289 325 IPR001810 GO:0005515
Accr1g02377 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 413 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02377 331 411 RAD5 or RAD16-like Gene Family AT5G22750 32.955 2.75e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr1g02377 SNF2_N 5.6e-95 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02377 - - pcin:129315314 2478.36