Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02313 ATGTCCCCCGCCTACCCGCCAGTCTCCTCAGCCACCGGCACGGGCCTCGGCTATGGCATCGCCATCGCTGTCAGCATCCTCGTCCTCATTTCCAGCATCATGCTCGCCTCTTATGCTTGTGTCCGGATAAAGGCCAACGGCCGGGGCCTTAACCGCCGTATCAGTAGTAGTAGCACCAGCAGTAGCAGTGAGAACTCCGACGAGCCGGTGGTGGTTGTTTTGGGCCTGGATAAGCCCACCATTGAAGCCTACCCGAAGATTGTATTAGGGGAGAGTCGGCGATTGCCCATGCCCAATGGAGGTCCATGCGCCATTTGCTTGGGAGAGTACGTGAAGAATGATACGGTGCGGTGCGTTCCAGAGTGCAACCACTGTTTCCATGTGGAATGCTTGGATGAGTGGCTTCGTCTGAGCGCCACGTGTCCTCTTTGTCGGAACTCTCCTGCTCCGTCGCCGGGGCCGACGCCGGTTGCCACTCCTCTGTCAGAATTGGTTCCACTTGCTTCTTACGCTAGGTGA 519 0.578 MSPAYPPVSSATGTGLGYGIAIAVSILVLISSIMLASYACVRIKANGRGLNRRISSSSTSSSSENSDEPVVVVLGLDKPTIEAYPKIVLGESRRLPMPNGGPCAICLGEYVKNDTVRCVPECNHCFHVECLDEWLRLSATCPLCRNSPAPSPGPTPVATPLSELVPLASYAR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02313 172 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Accr1g02313 172 PANTHER RING-H2 FINGER PROTEIN ATL67 10 171 IPR044289 GO:0016567|GO:0016740
Accr1g02313 172 SUPERFAMILY RING/U-box 102 156 - -
Accr1g02313 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 150 IPR013083 -
Accr1g02313 172 CDD RING-H2_EL5-like 103 145 - -
Accr1g02313 172 Pfam Ring finger domain 103 145 IPR001841 -
Accr1g02313 172 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02313 Accr-Chr1 58350826 58351344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02313 1 172 C3H Transcription Factor Family AT5G07040 62.428 6.89e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02313 - - qsa:O6P43_029738 231.876