Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02303 ATGATGCACGCAAGTAAGAATGAGAGGGGACACCGAGCATGTGCAGCATGCAAGCACCTGAGAAGGAGGTGCCATGAGAACTGTGTTTTGGCACCATATTTTCCGGGAAATAAGATCGAAGAATTCCAAGCAGTTCAAACAGTGTTCGGAGTGAGCAACTTGATCAAGTTGGTGAAACGCGTAAGAAAAGAGCATCGAAAAACAGTGGTGGAATCCCTCATATGGGAAGCAAAATGCAGACTAGAAGATCCAGTTCTGGGTTCTTCATTATACAAGATAATGTACGATAACCTCCGGCAACAGATTTATCGTAATAATAACTGTAATCGTAATCAGAATCATCACCAGATATTGCAGCTACCGTTACCTCATCATCAGCTTCATCATCAAGAAGACGAGTTGAAGAACTTTCAGAATCACTTGGTGGTTAATGGAGAAAGTTCATCGGTTGAAGATGGGTGGGAATTTCTTCATTCAAATAATAAGAATAACATGAGTGTGGTTCCTGTTCTGTGTGGATTAATCTATTGTAGTTTCCTCGGCCACTGA 549 0.4153 MMHASKNERGHRACAACKHLRRRCHENCVLAPYFPGNKIEEFQAVQTVFGVSNLIKLVKRVRKEHRKTVVESLIWEAKCRLEDPVLGSSLYKIMYDNLRQQIYRNNNCNRNQNHHQILQLPLPHHQLHHQEDELKNFQNHLVVNGESSSVEDGWEFLHSNNKNNMSVVPVLCGLIYCSFLGH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02303 182 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Accr1g02303 182 Pfam Lateral organ boundaries (LOB) domain 13 91 IPR004883 -
Accr1g02303 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02303 Accr-Chr1 58111170 58111718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02303 11 88 AS2 family AT1G06280 57.692 1.26e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr1g02303 LOB 3.2e-30 No_clan