Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02239 ATGAAGAGGTATTCCAGTGCTTCTTCTTCCTCTTGCTCTTCTTCTTCTCCATCTCCGTCGCCTTCTTCTTCGCCGTCTTGTTCTCTCGAGTTTCAGAATCCTGATCAGACGGAAGCGCCAGGCAGAGCGAGTAATAAGCGAGCCAGAAGAAGTGGTAACGGTAACGGTAACGGCAATGACAATGACAATGGAGATAATGATGATAATAAGTCCAAGAAGGTGAAAGGTATGAGCTTGAGCTCTTCCGCCATTAATGGCGGACGAAGAAGTTCCGCTTACAGAGGAGTCACTAGGCATCGATGGACTGGGAGGTTTGAAGCTCATCTCTGGGATAAGAGTTGCTGGAATAATCTCCAGAACAAGAAGGGACGACAAGGGGCTTATGACAATGAAGAAGCTGCCGCGAGAACCTATGATCTTGCTGCTCTTAAATACTGGGGAAGAGAGTCAACATTGAATTTTCCGATAGAAATATATGCGAAGGAGCTTGAGGAAATGGAGAAGGTCACAAAAGAAGAGTACTTAGCTTCATTGCGACGACAAAGCAGTGGATTTTCTAGAGGTGTTTCTAAATATCGAGGGGTAGCTAGGCATCACCATAATGGCAGATGGGAAGCTCGGATTGGAAGAGTATTGGGCAACAAATATCTCTACTTGGGCACATATAGTACTCAAGAAGAAGCGGCTACAGCATACGACTTGGCGGCTATACAATACAGAGGCGCAAATGCAGTCACCAATTTCGATATCAGCAGATACACCGACAAGATCAACATAATTAACCAGAGCACCAATGGTGAATCCCAAGAAGATCAAACTGTAATCACAATACCATCACAAGTAAATGAAGTAGAAGAAGATCAAGAAGCACCTCCCAATTCATCTTCCTCATGTTCCTCCGAGTTAGAAAATCTGCAGAACCAGAAGCAACCACCACAACAGCAACTGCAAGACCAACAAATCGAACTTCAAAATCCTCATATTCAACCTAATCAGATCCCTCCATTGAGAGAAGAATCCTCTCCGATTGCTCATGTGGACCCTACTACGACGACCACTGACGAACAGGAGCTTCCATGGATCTTCATGGACGACGACGGATTCTCTCAGTTTCAAGTTCCAGATCTGTCTGACGGAGACTTACCTAGCGTGTTCAGTGATGGCGCACGAAGATTCGACGATGACATTGGATTTCTGTTCAGGCCAGATCCCGAGGAGGCCGATTTCAACCTGGACGCGATTTTGAGCAGTCCGAGCTATGGAGACTTGGCGATGGTGGATTCGACGAGGATGGTGGCTGATGATGATTGTGGTCAAGAGAAGTTGCTCTGCTCTGCAAATTCTGCTTCTTGTTCACCAAACTCTTCAATTTCTTATTCGGATTATACTTCATAA 1395 0.4552 MKRYSSASSSSCSSSSPSPSPSSSPSCSLEFQNPDQTEAPGRASNKRARRSGNGNGNGNDNDNGDNDDNKSKKVKGMSLSSSAINGGRRSSAYRGVTRHRWTGRFEAHLWDKSCWNNLQNKKGRQGAYDNEEAAARTYDLAALKYWGRESTLNFPIEIYAKELEEMEKVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTYSTQEEAATAYDLAAIQYRGANAVTNFDISRYTDKINIINQSTNGESQEDQTVITIPSQVNEVEEDQEAPPNSSSSCSSELENLQNQKQPPQQQLQDQQIELQNPHIQPNQIPPLREESSPIAHVDPTTTTTDEQELPWIFMDDDGFSQFQVPDLSDGDLPSVFSDGARRFDDDIGFLFRPDPEEADFNLDAILSSPSYGDLAMVDSTRMVADDDCGQEKLLCSANSASCSPNSSISYSDYTS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02239 464 Gene3D AP2/ERF domain 92 158 IPR036955 GO:0003700|GO:0006355
Accr1g02239 464 Gene3D AP2/ERF domain 190 251 IPR036955 GO:0003700|GO:0006355
Accr1g02239 464 FunFam AP2-like ethylene-responsive transcription factor 91 157 - -
Accr1g02239 464 MobiDBLite consensus disorder prediction 283 354 - -
Accr1g02239 464 SUPERFAMILY DNA-binding domain 190 251 IPR016177 GO:0003677
Accr1g02239 464 MobiDBLite consensus disorder prediction 1 91 - -
Accr1g02239 464 PRINTS Ethylene responsive element binding protein signature 231 251 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 FunFam AP2-like ethylene-responsive transcription factor 190 251 - -
Accr1g02239 464 Pfam AP2 domain 92 147 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 Pfam AP2 domain 190 241 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 CDD AP2 190 251 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 SUPERFAMILY DNA-binding domain 91 157 IPR016177 GO:0003677
Accr1g02239 464 ProSiteProfiles AP2/ERF domain profile. 191 249 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 319 - -
Accr1g02239 464 MobiDBLite consensus disorder prediction 283 336 - -
Accr1g02239 464 CDD AP2 91 156 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 MobiDBLite consensus disorder prediction 48 62 - -
Accr1g02239 464 ProSiteProfiles AP2/ERF domain profile. 92 155 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 SMART rav1_2 191 255 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 SMART rav1_2 92 161 IPR001471 GO:0003700|GO:0006355
Accr1g02239 464 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02239 Accr-Chr1 57020764 57027515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02239 179 267 AP2-EREBP Transcription Factor Family AT5G57390 36.082 2.00e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr1g02239 AP2 3.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02239 - - pcin:129314889 609.372