Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02223 ATGGACAGAGTCCGTGGCAAAGGAGATGAATTAAAGAAGTCTCCGTCGCTGCATTCCTCATCTTCAGCTGTCGCTGTAGCTATCAAAGGTAACAAGAAAAGCAAGCATATGGTGCAATGGGCACTGGATACTTTTGTTCCCGAGGGAAGAATTGTGTTTAAGCTGATACATGTCCATTCAGAAGCTTCTTTTAAGAAGGAAATAGAGTGGAAGACAAGTGTAATGCTCCTACCTTACAAGAAAATGTGTGAGCAGAGAAAGGTTCATGTTGATATTGTAATGATTCAATCTGATGATGTAGAAACTGCAATAGCAGAGGAAGTTGCCAAGAGTTCTATAACCAACCTGGTTATAGGGGCTTCATCTCATGCCATATTTACTAGTAAACTGAAGGGTTTATCTGCGAAAATATCATCATGCACTCCAAGATTTTGTACAGTCTATGCTGTTTCCAAAGGGAAGCTGTTTTCTTCACGGCCATCAGATGTAGAGATTGATGAAAGCTTAATAGATGACAGTAGTGAAACCAGTTGTTCCACCAATAGCTCATTGAACTCTGCGTCCACCTCTCAGATAGACTATGGTTCAGTTGGATCATACACTCCCATAAATTCCTCTTCCCTAGCGGCACAGAGATATCAAGCTCTTTCAGCCATTAATCAGACCCGTCAGAGCACAAAAGCTGGTTTAATTGAAAATAACCACTCTAGAAGCCATTCTCTAGATCTTGGCATAGAGCAAACTGCTATTTATTCTTCTACAAGAAATTCAGATATTGACTATGCTTTGAGCCGGGTCTCTAGCTGCAAAAGCAATCTATCAGATGGTGAATCTTGGAATTGTTATCAAAATCCCACCATGGATGTATCACATGCTACTGTGTCACCTGATAAAGAGGAAAGTTTTAACCTTGAGCTGGAAAGGTTGAGAATTGAACTAAAGCATGCCCAAGGAATGCATATGGTAGCTCAAAGACAGAATATTTATGCATCACAAATGTTGAACAATCTAAGTAAGAAGAGAATGGAGGAATCCGTGAAATTGAAGGAAATTATTGCTAAGGAAGACATGGCCAAAAAATTAGTAACGAAGGAGAGAGAGAAATGTGAAGCAGCAGAAAGAGAAGCTGCTTATTTGAAAAGAAGTTCCGAAGAGGAAGCCTTTGACAGAAGAGAAGCAGAGATGAAAGCTGTGGAAGCTGCTGAAAGGAATGAAAAGCTAGAGGATGCTCTTAGTGGTTCCATGCTTCAGTATAAGAAGTTTACATGGGATGAAATAATTTCAGCTACCACATCATTCTCTGAAGATCTAAGAATTGGAAAGGGAGCTTGTGGAACAGTTTACAAGTGTGATTTGTATCATACACCTGTGGCAGTAAAAATTCTTCACTCTAATGAGGACCACATTATCAAGCAACTCCAACAAGAGTTGGAAATACTGAGCAGAATTCGTCATCCAAATTTACTTCTCCTTCTCGGGGCTTGCCCCGATCATGGATGCCTTGTGTATGAATACATGGAGAACGGTAGCTTAGAGGACACTTTACTCCAAAATAAAAGTAATATCACAATTCCATGGTTCAAGAGGTACCAAATTGCATGGGAAGTAGCCTCTGTTCTTGCCTTTCTTCATAGCTCAAAGCCCAGACCCATCGTCCATCGTGATTTGAAACCGGCAAACATCTTGCTGGATGGGAATCTCGTGAGCAAGGTTGGCGATATAGGCCTCTCTACATTACTCCATTCAGATACTCTGTCTACAACGTTCAAGGACACAGAGCCTGTTGGAACACTCTCCTACATAGATCCTGAGTACCAAAGGACAGGGCAATTATCTCCGAAATCTGATGTTTATGCTTTTGGAATGGTGATCCTACAGTTGTTAACTGCAAAACCAGCTAGGGCACTTGCGCATTTAGTAGAAACAGCAATTGAAAAGGGAAATTTAGCAGAAATGTTGGATCCTACGGCAGGGAATTGGCCATTTCAGGAGACTTTGGACTTAGCTCGATTAGGCCTAAGCTGTGCAGAACTTCAGCGTAGAGACAGGCCTGATTTGAAAGACCATGTACTTCCCATACTGGAGAGATTAAAAGAAGTCGCTGATAAGGCTCAACATTCTGCCACAGTTGTTTCTGTTAAATCTAGACCCCCTAATCACTTTATCTGCCCAATACTTCAGGATGTGATGGAGAATCCTTGTGTTGCTGCTGATGGTCATACTTATGATTACAAAGCCATTGTGACATGGCTACAAACCCATGACAAATCACCAATGTCAAATGTGCCATTACCTCATAAGAATCTGATTCCGAATTACACGCTTCTATCTGCTATTATGGAGTGGAAATCCAAACAAAATTGA 2364 0.4107 MDRVRGKGDELKKSPSLHSSSSAVAVAIKGNKKSKHMVQWALDTFVPEGRIVFKLIHVHSEASFKKEIEWKTSVMLLPYKKMCEQRKVHVDIVMIQSDDVETAIAEEVAKSSITNLVIGASSHAIFTSKLKGLSAKISSCTPRFCTVYAVSKGKLFSSRPSDVEIDESLIDDSSETSCSTNSSLNSASTSQIDYGSVGSYTPINSSSLAAQRYQALSAINQTRQSTKAGLIENNHSRSHSLDLGIEQTAIYSSTRNSDIDYALSRVSSCKSNLSDGESWNCYQNPTMDVSHATVSPDKEESFNLELERLRIELKHAQGMHMVAQRQNIYASQMLNNLSKKRMEESVKLKEIIAKEDMAKKLVTKEREKCEAAEREAAYLKRSSEEEAFDRREAEMKAVEAAERNEKLEDALSGSMLQYKKFTWDEIISATTSFSEDLRIGKGACGTVYKCDLYHTPVAVKILHSNEDHIIKQLQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGSLEDTLLQNKSNITIPWFKRYQIAWEVASVLAFLHSSKPRPIVHRDLKPANILLDGNLVSKVGDIGLSTLLHSDTLSTTFKDTEPVGTLSYIDPEYQRTGQLSPKSDVYAFGMVILQLLTAKPARALAHLVETAIEKGNLAEMLDPTAGNWPFQETLDLARLGLSCAELQRRDRPDLKDHVLPILERLKEVADKAQHSATVVSVKSRPPNHFICPILQDVMENPCVAADGHTYDYKAIVTWLQTHDKSPMSNVPLPHKNLIPNYTLLSAIMEWKSKQN 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02223 787 SUPERFAMILY RING/U-box 715 786 - -
Accr1g02223 787 SUPERFAMILY Protein kinase-like (PK-like) 415 688 IPR011009 -
Accr1g02223 787 Pfam Protein kinase domain 436 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g02223 787 SMART serkin_6 433 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g02223 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 787 IPR013083 -
Accr1g02223 787 CDD RING-Ubox_WDSUB1-like 718 772 - -
Accr1g02223 787 SMART Ubox_2 720 782 IPR003613 GO:0004842|GO:0016567
Accr1g02223 787 Coils Coil 390 410 - -
Accr1g02223 787 Coils Coil 355 382 - -
Accr1g02223 787 ProSiteProfiles U-box domain profile. 716 787 IPR003613 GO:0004842|GO:0016567
Accr1g02223 787 Coils Coil 306 326 - -
Accr1g02223 787 Pfam U-box domain 718 786 IPR003613 GO:0004842|GO:0016567
Accr1g02223 787 PANTHER OS02G0152300 PROTEIN 24 781 - -
Accr1g02223 787 Gene3D HUPs 21 151 IPR014729 -
Accr1g02223 787 ProSiteProfiles Protein kinase domain profile. 433 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g02223 787 Gene3D Phosphorylase Kinase; domain 1 417 505 - -
Accr1g02223 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Accr1g02223 787 Gene3D Transferase(Phosphotransferase) domain 1 506 716 - -
Accr1g02223 787 CDD STK_N 24 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02223 Accr-Chr1 56829913 56836175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02223 21 784 U-box Gene Family AT4G25160 46.420 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Accr1g02223 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02223 - - gmx:100801699 1014.6