Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02213 ATGAAACTAAGAGATTCATCAGAAATATTTGCAGAAGAGGAGGACGATGGAGAGAGAGAATTTGGTGGAAGAGGAACATACATAAAGAAAGGACCATGGAGTGCTGAAGAAGATGAGATTCTCATGAAACATGTCAAGAAAAACGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGTCTGCTTCCTCGGACCGGAAAATCTTGCCGGCTAAGATGGGTTAACAAGCTTAGACCCAACTTGAAGACAGGGTGCAAGTTTTCAGCGGAGGAAGAAACAGTGGTGATAGAATTGCAGGCACAGTTTGGGAACAAGTGGGCGAAAATAGCGACATACTTGGAAGGAAGAACAGACAACGATGTGAAGAATTTCTGGAGCAGTAGGAGAAAGAGGTTGGAGAGAATGTTGCAGAAACCATCTCCATCATCATCATCAAAGCCAAACTATAAGAACAAAGCAACATCTCAAATTCCTCATCGGCCACCACAAGTAGTTGAACAGGTTCCTGCTTCAAATCAAGTGGAGCAAAACCCATCAGGCAATAACAAGTGTCATCATGTGGTTGAAGTGAAAGCAGAGGAGGCCACTCAACTTGACATGGTTCCATCTTCATTTGAGTCTTGTTCATCAGACCACACTTTTTCTCAAGTGCTTCTTCCTGATGTGTCCCACAACCAAGTGGACTATGGCGGTCTCTTGCCGCCGCCAATGTGCCATGACCTACTTGATCCGGAGCCTTTCGGTGATGCCACCTTTCTTGACTTGTTTGAGCAGCACAAGAAGCCGGGAGGAATCTTTCAGACTTCATCAATTCCAACAAATGCCTTCTTTGAGGACTTCCCATGTGATTTATTTGACTATTTTGAAGACCTTCCTAACTCATTAGACAAATGA 894 0.443 MKLRDSSEIFAEEEDDGEREFGGRGTYIKKGPWSAEEDEILMKHVKKNGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEETVVIELQAQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRLERMLQKPSPSSSSKPNYKNKATSQIPHRPPQVVEQVPASNQVEQNPSGNNKCHHVVEVKAEEATQLDMVPSSFESCSSDHTFSQVLLPDVSHNQVDYGGLLPPPMCHDLLDPEPFGDATFLDLFEQHKKPGGIFQTSSIPTNAFFEDFPCDLFDYFEDLPNSLDK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02213 297 PANTHER TRANSCRIPTION FACTOR DUO1 25 294 - -
Accr1g02213 297 SMART sant 29 79 IPR001005 -
Accr1g02213 297 SMART sant 83 131 IPR001005 -
Accr1g02213 297 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Accr1g02213 297 FunFam Transcription factor GAMYB 85 157 - -
Accr1g02213 297 CDD SANT 32 77 IPR001005 -
Accr1g02213 297 MobiDBLite consensus disorder prediction 137 182 - -
Accr1g02213 297 ProSiteProfiles Myb-like domain profile. 86 129 IPR001005 -
Accr1g02213 297 FunFam MYB transcription factor 30 82 - -
Accr1g02213 297 MobiDBLite consensus disorder prediction 132 182 - -
Accr1g02213 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 81 IPR017930 -
Accr1g02213 297 Gene3D - 29 82 - -
Accr1g02213 297 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Accr1g02213 297 Pfam Myb-like DNA-binding domain 86 126 IPR001005 -
Accr1g02213 297 Gene3D - 85 159 - -
Accr1g02213 297 Pfam Myb-like DNA-binding domain 33 83 - -
Accr1g02213 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 133 IPR017930 -
Accr1g02213 297 CDD SANT 86 125 IPR001005 -
Accr1g02213 297 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02213 Accr-Chr1 56730292 56732627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02213 19 293 MYB Transcription Factor Family AT3G60460 41.967 2.27e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr1g02213 Myb_DNA-bind_6 6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02213 K09422 - pcin:129316628 369.777