Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02195 ATGTCTTCCAGGTTTATAGCAATTGCGGCTGTTATTACAGCTTTAAGCTTTGTGGGTGTACAATTTTGCTCGGAGTTGTCGTTCAGTCAACTGAAATCAGAGGGAATAATTGGCAAGAATTTAATTCACTTGGATAAGGAAAATGCCGATCATGTCATTGAGTTGTTTTTGGGGTCGTCCATCGCTATATGGTTACTCGCAAGTTTTGCGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATATTTTTCTCTGAGTTGTATCCTGCTGAAATCCGCAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGGCATTTCTACCAATGATTGTGCCTCCAACAATATATCAGGCAGGTCTATGGTCTAGTTGGATGATAGTGCTATGCTCTTTAAAGATGTTTCAAACTTTGGCCAAAGATCGTTTAGAGCGATTGAATGCATCTCCATCTGCCAAACCCTGGACTTATGGTCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTTATTATATATAAAACACACCCGTCCTCAACGCTGCTGTTGCTATTCTATGAGCCTCTCAGTATCGCTTGTGAGACCCTGCAGGCTATTTTGGTACATGGGTTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCACTAACTCTGATAGTGGAAGGTCAAAACTGCTTGACACATTTGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTTTTACTTGACATGGCAACTTCTTTTACAGCTCTTGGCCATTACTTGCATGTTTGGTGGCTTCATGGGATAGCTTTCCATGTTGTAGATGCAGTGCTATTTCTAAACATACGAACACTGCTAAGTACTCTTGTAAATCGGATAAGAGCCTATATAAGGTTAAGGACAGCGTTAGGTGCACTACATGCAGCTCTTCCTGATGCAACGACTGAGGAGCTACTATCATATGATGATGAATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCTAAAAAGTTAAAATGCAAACACCTTTTCCATCTTGCGTGTTTGAGATCTTGGTTAGATCAAGGATTGACAGACATGTATACTTGTCCGACATGTCGGAAGCCTCTCTTTGTTGCCCGGCCTCAAAATGAAGCAAGCTTCAATATGCGGGAAACATCAAGTGAAGAGCCACGTACACAACAAATAGGTTCAGGGCTTGATCAGCCAAACACTGGCAGACATACCATGGCTGCTGGATTATTTCCCAACCAGACACCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGAGTTGATGGGGCTGGTCCATCTACTGCAATTAGATCCGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATACTGCCTGGAGCCTTTGGCCCATCAATACTTCTCAGGCTCCCGGTAGTGGTTTACGGATTCCTTCTCCTCCTCATGGGAGGATCCCGGGAAGCTCTGATAATCTACATATGAGGAATGCCCCACGCTTTGCAAATGATAATCTGGCAAATATACTGGCCATGGCTGAGACCGTTCGGGAGGTTCTACCTCATATACCAGATGACTTGATTTTCCAGGACTTGCAGCGGACAAATTCTGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1767 0.429 MSSRFIAIAAVITALSFVGVQFCSELSFSQLKSEGIIGKNLIHLDKENADHVIELFLGSSIAIWLLASFAINAFILLNLCLKTIFFSELYPAEIRKLVECLINYVIYKGAFLPMIVPPTIYQAGLWSSWMIVLCSLKMFQTLAKDRLERLNASPSAKPWTYGRVYSALLLVFLVDLFWIRLCLIIYKTHPSSTLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACTNSDSGRSKLLDTFAAGSLMEWKWSLIRNLGFLLDMATSFTALGHYLHVWWLHGIAFHVVDAVLFLNIRTLLSTLVNRIRAYIRLRTALGALHAALPDATTEELLSYDDECAICREPMAKAKKLKCKHLFHLACLRSWLDQGLTDMYTCPTCRKPLFVARPQNEASFNMRETSSEEPRTQQIGSGLDQPNTGRHTMAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGVDGAGPSTAIRSVGLGRVQMMMRHLASVGENAQNALEDTAWSLWPINTSQAPGSGLRIPSPPHGRIPGSSDNLHMRNAPRFANDNLANILAMAETVREVLPHIPDDLIFQDLQRTNSVSVTVNNLLQM 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02195 588 Pfam CUE domain 552 588 IPR003892 GO:0043130
Accr1g02195 588 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 588 - -
Accr1g02195 588 Pfam Ring finger domain 338 382 IPR001841 -
Accr1g02195 588 CDD CUE_RIN3_plant 549 586 IPR035667 -
Accr1g02195 588 SMART FANCL_C_2 336 390 - -
Accr1g02195 588 Gene3D - 547 587 - -
Accr1g02195 588 ProSiteProfiles CUE domain profile. 548 588 IPR003892 GO:0043130
Accr1g02195 588 CDD RING-H2_AMFR 338 385 - -
Accr1g02195 588 MobiDBLite consensus disorder prediction 396 419 - -
Accr1g02195 588 FunFam E3 ubiquitin protein ligase RIN2 547 587 - -
Accr1g02195 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 392 IPR013083 -
Accr1g02195 588 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Accr1g02195 588 SUPERFAMILY RING/U-box 326 389 - -
Accr1g02195 588 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Accr1g02195 588 SMART ring_2 340 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02195 Accr-Chr1 56452484 56461358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02195 62 395 C3H Transcription Factor Family AT3G16090 27.473 3.93e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02195 K10636 - gmx:100819656 854.744