Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02194 ATGTCTTCCAGGTTTATAGCAATTGCGGCTGTTATTACAGCTTTAAGCTTTGTGGGTGTACAATTTTGCTCGGAGTTGTCGTTCAGTCAACTGAAATCAGAGGGAATAATTGGCAAGAATTTAATTCACTTGGATAAGGAAAATGCCGATCATGTCATTGAGTTGTTTTTGGGGTCGTCCATCGCTATATGGTTACTCGCAAGTTTTGCGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATATTTTTCTCTGAGTTGTATCCTGCTGAAATCCGCAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGGCATTTCTACCAATGATTGTGCCTCCAACAATATATCAGGCAGGTCTATGGTCTAGTTGGATGATAGTGCTATGCTCTTTAAAGATGTTTCAAACTTTGGCCAAAGATCGTTTAGAGCGATTGAATGCATCTCCATCTGCCAAACCCTGGACTTATGGTCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTTATTATATATAAAACACACCCGTCCTCAACGCTGCTGTTGCTATTCTATGAGCCTCTCAGTATCGCTTGTGAGACCCTGCAGGCTATTTTGGTACATGGGTTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCACTAACTCTGATAGTGGAAGGTCAAAACTGCTTGACACATTTGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTTTTACTTGACATGGCAACTTCTTTTACAGCTCTTGGCCATTACTTGCATGTTTGGTGGCTTCATGGGATAGCTTTCCATGTTGTAGATGCAGTGCTATTTCTAAACATACGAGTAAATATTTGTACACTGCTAAGTACTCTTGTAAATCGGATAAGAGCCTATATAAGGTTAAGGACAGCGTTAGGTGCACTACATGCAGCTCTTCCTGATGCAACGACTGAGGAGCTACTATCATATGATGATGAATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCTAAAAAGTTAAAATGCAAACACCTTTTCCATCTTGCGTGTTTGAGATCTTGGTTAGATCAAGGATTGACAGACATGTATACTTGTCCGACATGTCGGAAGCCTCTCTTTGTTGCCCGGCCTCAAAATGAAGCAAGCTTCAATATGCGGGAAACATCAAGTGAAGAGCCACGTACACAACAAATAGGTTCAGGGCTTGATCAGCCAAACACTGGCAGACATACCATGGCTGCTGGATTATTTCCCAACCAGACACCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGAGTTGATGGGGCTGGTCCATCTACTGCAATTAGATCCGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATACTGCCTGGAGCCTTTGGCCCATCAATACTTCTCAGGCTCCCGGTAGTGGTTTACGGATTCCTTCTCCTCCTCATGGGAGGATCCCGGGAAGCTCTGATAATCTACATATGAGGAATGCCCCACGCTTTGCAAATGATAATCTGGCAAATATACTGGCCATGGCTGAGACCGTTCGGGAGGTTCTACCTCATATACCAGATGACTTGATTTTCCAGGACTTGCAGCGGACAAATTCTGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1779 0.4272 MSSRFIAIAAVITALSFVGVQFCSELSFSQLKSEGIIGKNLIHLDKENADHVIELFLGSSIAIWLLASFAINAFILLNLCLKTIFFSELYPAEIRKLVECLINYVIYKGAFLPMIVPPTIYQAGLWSSWMIVLCSLKMFQTLAKDRLERLNASPSAKPWTYGRVYSALLLVFLVDLFWIRLCLIIYKTHPSSTLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACTNSDSGRSKLLDTFAAGSLMEWKWSLIRNLGFLLDMATSFTALGHYLHVWWLHGIAFHVVDAVLFLNIRVNICTLLSTLVNRIRAYIRLRTALGALHAALPDATTEELLSYDDECAICREPMAKAKKLKCKHLFHLACLRSWLDQGLTDMYTCPTCRKPLFVARPQNEASFNMRETSSEEPRTQQIGSGLDQPNTGRHTMAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGVDGAGPSTAIRSVGLGRVQMMMRHLASVGENAQNALEDTAWSLWPINTSQAPGSGLRIPSPPHGRIPGSSDNLHMRNAPRFANDNLANILAMAETVREVLPHIPDDLIFQDLQRTNSVSVTVNNLLQM 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02194 592 SMART ring_2 344 385 IPR001841 -
Accr1g02194 592 FunFam E3 ubiquitin protein ligase RIN2 551 591 - -
Accr1g02194 592 ProSiteProfiles Zinc finger RING-type profile. 344 386 IPR001841 -
Accr1g02194 592 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 592 - -
Accr1g02194 592 Pfam CUE domain 556 592 IPR003892 GO:0043130
Accr1g02194 592 CDD CUE_RIN3_plant 553 590 IPR035667 -
Accr1g02194 592 CDD RING-H2_AMFR 342 389 - -
Accr1g02194 592 MobiDBLite consensus disorder prediction 400 423 - -
Accr1g02194 592 ProSiteProfiles CUE domain profile. 552 592 IPR003892 GO:0043130
Accr1g02194 592 SUPERFAMILY RING/U-box 330 393 - -
Accr1g02194 592 Pfam Ring finger domain 342 386 IPR001841 -
Accr1g02194 592 SMART FANCL_C_2 340 394 - -
Accr1g02194 592 Gene3D - 551 591 - -
Accr1g02194 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 396 IPR013083 -
Accr1g02194 592 FunFam E3 ubiquitin protein ligase RIN2 317 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02194 Accr-Chr1 56452484 56461358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02194 62 399 C3H Transcription Factor Family AT3G16090 26.703 4.53e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02194 K10636 - gmx:100819656 848.966