Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02183 ATGTCATTAAGAATTAATGGTGTTGATGATAATGAAGAACAAGAAAGGAGATGGGAAAATCTGCCTCGAGAATTGCTTTGGGACATAATAAAGAGAGTGGAAGAGACTGAGACATGTTGGCCTTCACGTTCAATTCTGTCTTGTGCTTCAGTTTGCAAGTCATGGAGAACAATCACAAAGGAGATTGTTAAGAGTCCTGAGCTATCTGGACGACTCACTTTTCCCATCTCATTGAAGCAACCAGGGCCTATAGATTTTCCTATCCAGTGCTATATCAAAAGGAACAGAGAAACCTCTACTTATTTGTTGTACTTGGGTCCTGAGCCATTTGCTGATGACTTTCGTCGGACCAGCAAGACATATATTGGCAAACTCAGGTCTAATTTCCTCGATTACAAGTTCAATATATATGACAGACAATATCCATCACAAGATGAAGCTGCAGCTGCAGGAGGAAACAAGGTGTCGTCTCCACGAAAGTACAAAGTTGGTACAATAAAATACAAGAACTACACGATTCACAAATACAGATTTCACAGTATCAAAGGTCCAAGAAAAATGAAGTGTCTCATGAAGATGATGATGAACTACTCTACTACTACTTCTTCTAATAATAATAAGGTGGATTATCATCAACATCCTCTGAAACTTAAAAGCAAGGTTCCCATATGGGATGAAGAATGCCAACACTGGCACCTCAACTTCAGGCATTATGATACTTTGGCTTTTGATAATTTCCAGCTTGTTTCTGCTGCTGACGACGAAGACGACGACGACGAAGATGAAGAAGAAGAAGAAGAAAAGATAATTTTGGAATTTGCTAAGATAGAAGAAGACGTGTTTATAATGGATTACTGTTATCCACTCTCAGCATTTCAAGCCTTTGCTCTCTGTCTCAGCAACTTTGATGCCAAACCAATCAGTGATTGA 930 0.3914 MSLRINGVDDNEEQERRWENLPRELLWDIIKRVEETETCWPSRSILSCASVCKSWRTITKEIVKSPELSGRLTFPISLKQPGPIDFPIQCYIKRNRETSTYLLYLGPEPFADDFRRTSKTYIGKLRSNFLDYKFNIYDRQYPSQDEAAAAGGNKVSSPRKYKVGTIKYKNYTIHKYRFHSIKGPRKMKCLMKMMMNYSTTTSSNNNKVDYHQHPLKLKSKVPIWDEECQHWHLNFRHYDTLAFDNFQLVSAADDEDDDDEDEEEEEEKIILEFAKIEEDVFIMDYCYPLSAFQAFALCLSNFDAKPISD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02183 309 PRINTS Tubby superfamily signature 266 285 IPR000007 -
Accr1g02183 309 PRINTS Tubby superfamily signature 121 145 IPR000007 -
Accr1g02183 309 PRINTS Tubby superfamily signature 217 234 IPR000007 -
Accr1g02183 309 PRINTS Tubby superfamily signature 287 309 IPR000007 -
Accr1g02183 309 SUPERFAMILY Tubby C-terminal domain-like 66 306 IPR025659 -
Accr1g02183 309 Gene3D Tubby Protein; Chain A 75 309 IPR025659 -
Accr1g02183 309 Pfam F-box domain 18 63 IPR001810 GO:0005515
Accr1g02183 309 SUPERFAMILY F-box domain 16 60 IPR036047 GO:0005515
Accr1g02183 309 PANTHER TUBBY-RELATED 12 305 - -
Accr1g02183 309 Gene3D - 10 68 - -
Accr1g02183 309 Pfam Tub family 111 303 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02183 Accr-Chr1 56368266 56371222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02183 18 306 TUB Transcription Factor Family AT2G18280 43.220 1.72e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr1g02183 Tub 5.9e-46 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02183 K19600 - ini:109151104 255.758