Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02182 ATGTCATTAAGAATTAATGGTGTTGATGATAATGAAGAACAAGAAAGGAGATGGGAAAATCTGCCTCGAGAATTGCTTTGGGACATAATAAAGAGAGTGGAAGAGACTGAGACATGTTGGCCTTCACGTTCAATTCTGTCTTGTGCTTCAGTTTGCAAGTCATGGAGAACAATCACAAAGGAGATTGTTAAGAGTCCTGAGCTATCTGGACGACTCACTTTTCCCATCTCATTGAAGCAACCAGGGCCTATAGATTTTCCTATCCAGTGCTATATCAAAAGGAACAGAGAAACCTCTACTTATTTGTTGTACTTGGGTCCTGAGCCATCAGAGAATAAGAATGATAAGTTGTTGTTGGCTGCCAAAAGAAAACAAAGGATAAGAAATATAAAATATGTCATATCTTTAGTTGCTGATGACTTTCGTCGGACCAGCAAGACATATATTGGCAAACTCAGGTCTAATTTCCTCGATTACAAGTTCAATATATATGACAGACAATATCCATCACAAGATGAAGCTGCAGCTGCAGGAGGAAACAAGGTGTCGTCTCCACGAAAGTACAAAGTTGGTACAATAAAATACAAGAACTACACGATTCACAAATACAGATTTCACAGTATCAAAGGTCCAAGAAAAATGAAGTGTCTCATGAAGATGATGATGAACTACTCTACTACTACTTCTTCTAATAATAATAAGGTGGATTATCATCAACATCCTCTGAAACTTAAAAGCAAGGTTCCCATATGGGATGAAGAATGCCAACACTGGCACCTCAACTTCAGGCATTATGATACTTTGGCTTTTGATAATTTCCAGCTTGTTTCTGCTGCTGACGACGAAGACGACGACGACGAAGATGAAGAAGAAGAAGAAGAAAAGATAATTTTGGAATTTGCTAAGATAGAAGAAGACGTGTTTATAATGGATTACTGTTATCCACTCTCAGCATTTCAAGCCTTTGCTCTCTGTCTCAGCAACTTTGATGCCAAACCAATCAGTGATTGA 1011 0.3828 MSLRINGVDDNEEQERRWENLPRELLWDIIKRVEETETCWPSRSILSCASVCKSWRTITKEIVKSPELSGRLTFPISLKQPGPIDFPIQCYIKRNRETSTYLLYLGPEPSENKNDKLLLAAKRKQRIRNIKYVISLVADDFRRTSKTYIGKLRSNFLDYKFNIYDRQYPSQDEAAAAGGNKVSSPRKYKVGTIKYKNYTIHKYRFHSIKGPRKMKCLMKMMMNYSTTTSSNNNKVDYHQHPLKLKSKVPIWDEECQHWHLNFRHYDTLAFDNFQLVSAADDEDDDDEDEEEEEEKIILEFAKIEEDVFIMDYCYPLSAFQAFALCLSNFDAKPISD 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02182 336 Gene3D - 10 68 - -
Accr1g02182 336 Pfam Tub family 78 330 IPR000007 -
Accr1g02182 336 Gene3D Tubby Protein; Chain A 75 336 IPR025659 -
Accr1g02182 336 PANTHER TUBBY-RELATED 12 332 - -
Accr1g02182 336 SUPERFAMILY F-box domain 16 60 IPR036047 GO:0005515
Accr1g02182 336 SUPERFAMILY Tubby C-terminal domain-like 66 333 IPR025659 -
Accr1g02182 336 PRINTS Tubby superfamily signature 132 148 IPR000007 -
Accr1g02182 336 PRINTS Tubby superfamily signature 148 172 IPR000007 -
Accr1g02182 336 PRINTS Tubby superfamily signature 244 261 IPR000007 -
Accr1g02182 336 PRINTS Tubby superfamily signature 293 312 IPR000007 -
Accr1g02182 336 PRINTS Tubby superfamily signature 314 336 IPR000007 -
Accr1g02182 336 Pfam F-box domain 18 63 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02182 Accr-Chr1 56368266 56371222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02182 18 333 TUB Transcription Factor Family AT2G18280 47.458 5.61e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr1g02182 Tub 3.8e-66 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02182 K19600 - ini:109151104 298.901