Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02178 ATGAACATGGAGTTCGGTTCACTAGAATATTGGAGGAACTACTTTCGAACGGCTAATACTGATATATTCAATGTAATTGACCACGCTATTATGGTGGCGATTTCCGATCATCCGAACGAATTTAGATTACGAAGGGACCAGATTTCGGAACGTTTGTTTTCTTGGGGATTGACTCGTTCTGTGGGGTGTAATCCATTAAGGTCTGTGGTTTCCGACGACGATAAGGAAGATGGAGGTTGTAAGTGTAGTTTTAGTCGAAAAGCTACTGAATTAGAAGGAGGCTCTACTAAAGAGAGAAAGGGCAAGAGTGGCAGAGACAATGAGATTAATAGGACCCAAGTTAGTAGTTTCAGTTTTGGAGAAGATGAGGGATTCATCGATGAGATTGAAAAAGAATCTATGATAGTTGCGGAGATCTTGAGGATCAAAGAGATTCTCCGTATGGAAAAGGCTGATTCAGTGTTGTTTGAGTCACTAAGGAGGTTGCAGCCGCTGGCACTGACGGTGGACCTTCTTAAGGAAACTGAGATTGGAAAGGCTGTCAATCCTCTCAAGAAGCACAGCTCCAAGGAGATCAGTCAACTGGCGCGAACTCTTATCGATGGCTGGAAAGCAATGGTAGATGAATGGATCAAGTCAACAGAAGCTATAGAAGCAAAAGGCGCCCCAGATTCAATTAATGCATCAGTCATTAATGAAGAGGAAGAGCTTCCTTCTCCTCCTCTGGACGAAGTTGCTATGAGACAGAGTAAACCAGTCTGCACTGATTCTAGCTCTAGCAGGCAACCAAAATGCAGCTTACCACAAAAAAGCAACACAGGACCAAAGATGCAGCAGAAACCAAAGAAATATGTTATCCTCCGAAGGAGGCCTCTTGTTGCTCAGCAAGATTGTCAGAAATTCAAGTGCTCAGATGATGTTTCAGTCCAAGCAAAACTAGAAGCCACTAAGAGGAAACTTCATGACTCTTATCAGCAAGCTGCAAATGCCAAGAAACAGCGATCAATACGTGTTATCGAGTTGCATGATCTTCCAAAGCAAGGAAATATTGGTCCCCAATATCCACACTCCTCCAAGCTTTTTGGAAGGTTCTAG 1095 0.432 MNMEFGSLEYWRNYFRTANTDIFNVIDHAIMVAISDHPNEFRLRRDQISERLFSWGLTRSVGCNPLRSVVSDDDKEDGGCKCSFSRKATELEGGSTKERKGKSGRDNEINRTQVSSFSFGEDEGFIDEIEKESMIVAEILRIKEILRMEKADSVLFESLRRLQPLALTVDLLKETEIGKAVNPLKKHSSKEISQLARTLIDGWKAMVDEWIKSTEAIEAKGAPDSINASVINEEEELPSPPLDEVAMRQSKPVCTDSSSSRQPKCSLPQKSNTGPKMQQKPKKYVILRRRPLVAQQDCQKFKCSDDVSVQAKLEATKRKLHDSYQQAANAKKQRSIRVIELHDLPKQGNIGPQYPHSSKLFGRF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02178 364 MobiDBLite consensus disorder prediction 234 281 - -
Accr1g02178 364 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 218 IPR035441 -
Accr1g02178 364 CDD TFIIS_I 137 208 - -
Accr1g02178 364 MobiDBLite consensus disorder prediction 251 278 - -
Accr1g02178 364 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 220 IPR035441 -
Accr1g02178 364 ProSiteProfiles TFIIS N-terminal domain profile. 137 210 IPR017923 -
Accr1g02178 364 Coils Coil 313 333 - -
Accr1g02178 364 SMART TFS2_5 136 209 IPR003617 GO:0005634
Accr1g02178 364 Pfam TFIIS helical bundle-like domain 159 207 IPR017923 -
Accr1g02178 364 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 248 349 IPR044805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02178 Accr-Chr1 56272216 56274443 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Accr1g02178 Med26 4.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02178 - - qsa:O6P43_006336 331.257