Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02164 ATGGGGAAGAAAAAGAAGATTAACAACAATGGTGGCAAGATGTGCATGATCTGCAAAAGGTGGTTCGCTAGCGGAAAAGCTGTGGGAGGGCATATGAAGGCTCACTTTGTCAAACTTCCTATCCCTCCCAAGCCTGCTCCAATATCTCCAATTGCAGATCAAGTTCCTTCAAAAGTATACAAAGTCGATGTCAATGGTGGTTCATCCTCAACCCATCAGTGTCCCGAACAAAACTTTCACCCCATGAATCATCAAGACTTTGCAGAAAGAGATCTGAAACTCGTCGATGACGACCAAGGAAGCGCAGAATCAGATCAATCTTACATGACTAGAAAGAGATTTAAACGCAGTTTCCGTAAGATTGATGATCCAACAACAAGAGAATTAATAATGTGGCCGCCGTCTAAGACAAAAGTTGATGAAGACAATAACCCAAAACAAACAGGTTTGATCTTTGATTCTTGCTTTCCAGCTTTAGATGCTGCTTTGACTCTCATGTTGCTTTCCAAGGAGAAATGGCCCCAAGGCAAAGAATTGAGCATCAAGAAGAAACAAAAAGTGAAGGATAATGAGAATGAACAAGAAGACTCATATGCGGAGGACCACTCTAATGGCGGCGGAAGGCCGCTCGAGTGCGAGATGGGCACGAAAGTTTTCGGATCTTACCAGGCACTTGGTGGGCACAAAGCAAGCCACAAAAAGTTTATCAAGAATGATGAATGGGAGGTAGATGGTGAATTTGATGAAGAAAATGGGGATGATGTTCTTGAAGATCCAAAACTGTTCAAGTGCCCCCACTGCTCCAAAGTGCTTGGATCTAGCCAAGGACTTGGAAGACACAAGAAGATTCACTTTCCCAATGCTATGAAATTTGGGGCTAATGACATAGATCTCAACTCACCTACCTGCTCCAGTGGAAGATATTGA 927 0.4326 MGKKKKINNNGGKMCMICKRWFASGKAVGGHMKAHFVKLPIPPKPAPISPIADQVPSKVYKVDVNGGSSSTHQCPEQNFHPMNHQDFAERDLKLVDDDQGSAESDQSYMTRKRFKRSFRKIDDPTTRELIMWPPSKTKVDEDNNPKQTGLIFDSCFPALDAALTLMLLSKEKWPQGKELSIKKKQKVKDNENEQEDSYAEDHSNGGGRPLECEMGTKVFGSYQALGGHKASHKKFIKNDEWEVDGEFDEENGDDVLEDPKLFKCPHCSKVLGSSQGLGRHKKIHFPNAMKFGANDIDLNSPTCSSGRY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02164 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 284 IPR013087 -
Accr1g02164 308 MobiDBLite consensus disorder prediction 178 210 - -
Accr1g02164 308 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Accr1g02164 308 SMART c2h2final6 210 232 IPR013087 -
Accr1g02164 308 SMART c2h2final6 13 35 IPR013087 -
Accr1g02164 308 SMART c2h2final6 262 284 IPR013087 -
Accr1g02164 308 SUPERFAMILY beta-beta-alpha zinc fingers 15 284 IPR036236 -
Accr1g02164 308 Gene3D Classic Zinc Finger 181 286 - -
Accr1g02164 308 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 13 286 IPR044303 GO:0006355
Accr1g02164 308 MobiDBLite consensus disorder prediction 178 202 - -
Accr1g02164 308 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
Accr1g02164 308 Pfam C2H2-type zinc finger 262 284 - -
Accr1g02164 308 Pfam C2H2-type zinc finger 217 234 - -
Accr1g02164 308 Pfam C2H2-type zinc finger 15 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02164 Accr-Chr1 56056104 56057030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02164 15 284 C2H2 Transcription Factor Family AT3G60580 31.273 1.37e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g02164 zf-C2H2_6 0.00076 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02164 - - pcin:129316597 256.529