Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02161 ATGGTATCAGGGTCTGGCGTATGCGCGAAGCGCGTGGTCGTAGACGCGCGCCATCACATGCTAGGTAGGCTGGCGTCGATTGTGGCTAAGGAGCTGCTCAATGGCCAGAAGGTGGTGGTGGTGCGGTGCGAGGAAATCTGCATCTCTGGTGGCTTGGTCCGTCAGAAGATGAAATACATGCGATTTCTCCGTAAGCGGATGAATACTAAGCCTTCTCATGGCCCTATCCACTTTCGTGCCCCTTCCAAGATTTTCTGGCGTACTGTTCGTGGAATGATACCACATAAGACAAAGCGTGGGGCAGAGGCTCTTGGAAGATTGAAGGTCTTTGAAGGCATACCTCCCCCATATGATAAAACGAAGAGGATGGTTGTCCCTGATGCCCTAAAGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTTTGGTGGGTAAATTGTCTTCCGAAGTTGGATGGAACTATTATGATACCATCAAGGTAAGTTTCCACTTCCTGAGCTTGGTCTTGCATGGTATTAGATTGGAAAAGGAGAAATAA 537 0.4898 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAEALGRLKVFEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLVGKLSSEVGWNYYDTIKVSFHFLSLVLHGIRLEKEK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02161 178 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Accr1g02161 178 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02161 178 PIRSF RPL13p_RPL13Aa_RPL16e_RPL13o 1 157 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02161 178 FunFam 60S ribosomal protein L13a-4 8 154 - -
Accr1g02161 178 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02161 178 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Accr1g02161 178 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02161 178 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Accr1g02161 178 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Accr1g02161 178 PANTHER RIBOSOMAL PROTEIN L13 2 159 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02161 Accr-Chr1 55988843 55990464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02161 1 159 Cytoplasmic Ribosomal Protein Gene Family AT3G24830 90.566 5.01e-110 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02161 K02872 - thj:104808786 313.923