Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02160 ATGGTATCAGGGTCTGGCGTATGCGCGAAGCGCGTGGTCGTAGACGCGCGCCATCACATGCTAGGTAGGCTGGCGTCGATTGTGGCTAAGGAGCTGCTCAATGGCCAGAAGGTGGTGGTGGTGCGGTGCGAGGAAATCTGCATCTCTGGTGGCTTGGTCCGTCAGAAGATGAAATACATGCGATTTCTCCGTAAGCGGATGAATACTAAGCCTTCTCATGGCCCTATCCACTTTCGTGCCCCTTCCAAGATTTTCTGGCGTACTGTTCGTGGAATGATACCACATAAGACAAAGCGTGGGGCAGAGGCTCTTGGAAGATTGAAGGTCTTTGAAGGCATACCTCCCCCATATGATAAAACGAAGAGGATGGTTGTCCCTGATGCCCTAAAGGTGTTGAGGCTTCAGAAGGGACACAAGTATTGTTTGGTGGGTAAATTGTCTTCCGAAGTTGGATGGAACTATTATGATACCATCAAGGAATTGGAGAAGAAAAGAAAGGAGAAAGCACAATTGGTTTATGAGAAGAAGAAGCAGATTGCTAAATTAAGGTCGAAGGCTGAGAAAATTGCTGAGGACAAGCTTGGTTCCCAACTGGAGATCCTAGCTCCAGTCAAGTATTGA 621 0.4815 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAEALGRLKVFEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLVGKLSSEVGWNYYDTIKELEKKRKEKAQLVYEKKKQIAKLRSKAEKIAEDKLGSQLEILAPVKY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02160 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02160 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Accr1g02160 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02160 206 Coils Coil 158 178 - -
Accr1g02160 206 FunFam 60S ribosomal protein L13a 155 206 - -
Accr1g02160 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Accr1g02160 206 Gene3D - 156 206 - -
Accr1g02160 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02160 206 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Accr1g02160 206 PANTHER RIBOSOMAL PROTEIN L13 2 184 IPR005822 GO:0003735|GO:0005840|GO:0006412
Accr1g02160 206 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Accr1g02160 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02160 Accr-Chr1 55988151 55990464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02160 1 206 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 86.957 2.85e-137 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02160 K02872 - gmx:100813340 387.882