Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02130 ATGAATTCTTTTTCATATGTTCCACCTGGATTTAGGTTCCATCCCACGGATGAGGAACTTGTTGATTACTACCTGAGGAAGAAAGTCACTTCAAGAAGGATTGATCTTAATGTCATCAAAGATGTGGACCTCTACAAAATTGAGCCATGGGATCTTCAAGAGATTTGCAGGATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTCAGTCATAAAGACAAGAAATATCCAACAGGGACCCGGACAAATAGAGCCACAGCTGCAGGCTTCTGGAAAGCAACAGGAAGAGATAAGGCTATCTATTCCAAGCATGATCTCATTGGGATGAGGAAAACCCTAGTTTTCTATAAGGGTCGAGCCCCTAATGGACAGAAATCTGATTGGATTATGCATGAGTATCGCCTAGAAACCGATGAAAATGGTACCCCTCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAATAACAACCATAAGGAAAGTGAGCGAGCATGACTCTCCTTGTTGGTATGATGACCAACAAGTCTCAACTTTCATGCAAGACTTGGACTCACCAAAGCACCAAAATCCTCATCCTTCTCATCAACCCAATATGATGTACCACCAAATCCCCATCAATACTTATCCTTGCAAGAAAGAGCTGGACCATAATCCTCATCATCACGTGCCTTTGCTTCACCAGCTTCAAACTCGCCACCACTTCCTCCCCCAGCTTCCGCTACTCGATTACCAGAACTCGAAATTGCTTCAGTCTTCGACTCCCACAGCCGTAAACCCTTGCAGCAGCAGCAACCTAATGGTACCATATGGTCTTGATCATGTGATGAACCATGCTGTGCCTGAAGATCATCAGCAAACTTTTCCGGGGGCTGCTGTTTATGGCAGTAGTAGCCAAGAACAAGTGACGGCGGATGATGAACAAGTGACCGATTGGCGGGTACTCGACAAGTTTGTCGCCTCACAGCTTAGTCAAGATGTGCCTAGTAATAAGGACCACAACAACAATAATAATGCAGGCGCAAGCAGCAGCAGCAACAATATTTTTCAGACCATGGACACTACGGCTAGTAGTGTACAATTCAGACCATCAAATTTGGAAAAGCAAGAAATGGTTCCTGAAAATGCCTCAACTTCAACCTCAAGTTGCCCAATTGATTTGTGGAAATAG 1176 0.4405 MNSFSYVPPGFRFHPTDEELVDYYLRKKVTSRRIDLNVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRITTIRKVSEHDSPCWYDDQQVSTFMQDLDSPKHQNPHPSHQPNMMYHQIPINTYPCKKELDHNPHHHVPLLHQLQTRHHFLPQLPLLDYQNSKLLQSSTPTAVNPCSSSNLMVPYGLDHVMNHAVPEDHQQTFPGAAVYGSSSQEQVTADDEQVTDWRVLDKFVASQLSQDVPSNKDHNNNNNAGASSSSNNIFQTMDTTASSVQFRPSNLEKQEMVPENASTSTSSCPIDLWK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02130 391 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Accr1g02130 391 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Accr1g02130 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 300 - -
Accr1g02130 391 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Accr1g02130 391 FunFam NAC domain-containing protein 16 160 - -
Accr1g02130 391 MobiDBLite consensus disorder prediction 369 391 - -
Accr1g02130 391 MobiDBLite consensus disorder prediction 325 349 - -
Accr1g02130 391 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02130 Accr-Chr1 55270101 55271889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02130 1 391 NAC Transcription Factor Family AT1G12260 51.880 2.20e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g02130 NAM 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02130 - - pcin:129315373 657.521