LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g02096	ATGGACCCTTCTTCCTCCATATGGGATGCCACTAAGATCTTCTGTTGTTTCCTCAACAAAGAAGCTGCTTATGCTTACGACTTGGAAAACAATCTGAAGTTGCTTGAAACAAAATGGGAAAGGCTTCAAGAGAAGAAGCAAGATGTGGAAGCATACCTTGAAGTAGAAGAAAATACTGGAGAAAAACAGAGACGTCATCAAGTGAGTGGTTGGCTCAAAAGAATGGAGAGCGCTCAAAAGGAAATAAAAGATATTCAAGTTCGTGGGGATAAACAAACTCAGGAAAACTGCTTGAGTAAATATTGTCCCAAATATTGCATAGCAAGTTACAAATTAGGAAAGAATATTGCCGGGATCCTAAGGAAGGTAGATGAACTAGAAAGTGAAGGAGAACCGTTTTGTAGGGATTTTAAAATTGCTCTCAAGCATCTGCACAAGCCGAATGAGATGCCTTGTGGTGAGACGGTGGGCTTAGATTTAATGTTTGATAAGGTATGGAGAAGTATTGAAGAAACAAACATTGGTATCATTGGCTTATATGGGATGGGCGGGGTGGGAAAGACAACATTGTTAAAGAAAATTAATAATAATTTTGCAAAGAGATCAGATTTTTACATTGTGTGGGTAGTGGTATCCAAAAGTCCCAACTTGGATAAGATTATGAACGACATCAAAAAAGAGGTAGGGATTGGAGATGAGATTTGGAGTCATTGTAGTAACCAAGATGGAAAGGCTCGAGAGATTTACAAGGTCCTAAAAAACAAGAAATTTGTTTTGTTCTTGGACGATATATGGGATAGATTGGACTTGGAAAAGGTTGGAGTGCCATATCCAAAGGAAACCAATTTTCAATCCAAAGTGTTATTCACAACACGATTTGAGGATGTTGTCTCAAAAATGAAAGCTGAAAGAACATTCAAAATTGAAGTTCTGCCTGAGAAAGAAGCTTTAGAGTTATTTTACATGAAAGTGGGTGAGGAAACTCTAAAATCAAGCCCTATCATTCACAATATAGCACAGAAGATGGCTAGTAAGTGTAAAGGGCTACCACTTGCATTGAGTGTGTTAGGAAGCGCCATGGCTGGTGTGAAGAGTAAAGAAGCATGGCAATACTCGATCAATAACTTAACAGAGTCTTCATGGACAGCTTCACCTTTGGAAAATGAGGTGTTTTTTGTCCTCAAGTTTAGTTATGATCGACTACCAGATGAAATGCACAAAAAATGTTTCTTATATTGTGCATCTTACCCAAATAATTATGTGATTAATGTAGTCGATCTAATTCGACTATGGATAGCGGAGGGGTTTCTTGACATTGATGGGATGAGAAGTTTACATGATATGCATTGCCATGCTGGGTCTATACTTGAAAAGTTGAAGTGTTCATGCTTGTTGGAGAATTATGTATATGATTCCTCTTCAATACCCTATATTAAGATACATGACGTCATTCGTGACATGGCACTATGGATTGCACGTGATCAAGATAAAAACAAAAACAAGATTATAGTACAAGAAGATGCACAAGCAATATCTCAAGCTAATTTTGAAAATTGGGAAATGGTGGAAAGGATTTCAATCTGGGATGGTGTTGAATCATGGATACAAAGCAAATCTTGGACAAGTCTCAAAACATTGTTTTTGAATTTCGAATCTGATTGTGCAATAAATGGATTACAAAATATCCAATACGCGAGCCAATTAAAAGTCTTGCATCTAAGGAGAATGAAAATTGTATCCGCCGAAGGACTAGGTGGCCTAAATCTTTTGGAATATCTATTATTGGGAAAAAGCGTTGTAATGAATGCATTAGACTTGTGGAGAGAGTTGAAGAATTTGAAAAGCCTGAAGTTTTTTCATTTGGAATTATCTAATGATAATGTTATTCCTTTGGGGCTTATATCAAGTCTTCATCAATTAAAATTGTGTGTATTTTATCTCAATGGAGTTCGAGATGAGAGAGAAGAGAAAAAATTTGTAGAGGAGCTGGAGTGCTCATCAAACTTAGAGGAGGTGGAGCTGGACATAACAACCGAGAGTGGCCTCAACGAATTACTTAAATCGACCAAGTTGCAAAATTGCATATATGTCCTTCATCTTCATAATGTTGACATCCAAGTTAATGGGCCATTATTATTGGCAACCATGTCAAAAATGAAGCACCTGCAACATCTTCAGTTGCATCATTTGCAAAACGTGATAGATCTTTCTGTTTATGACACATGTCGTCTATCCGCACTTCAAATTGTATGCGTTTTTTATTGCAATTCAATACATCATTTGACATGGTTGAAGTATGCTCCACTCCTTCGACGACTTGTCGTTGAAAATTGCATGTCAATAGAAGAAGTGATAAAGGGAGAAATAATATTAAAAGATGAGAAAGATACTATATTCCCTTCTCTTGAAGTGCTGGTATTGCAGATATTGCCAAAATTGAGGAGCATACATGAGAGGGTCTTGTCTTTCCCTTCCCTAAGATCCATCTATGTGAGTCACTGTAAAAATCTAAAGAAGTTGCCATTTGATTCCCATTTAGCCAAGGCTAAGTTGAGGCATATCTGGGGAGATCAAGAGTGGTGGGACAACTTGGAGTGGGATGACCCTGCTACTAAAGTCATTTTCCACTCGAAATTTCAACAGTGGTGA	2649	0.3749	MDPSSSIWDATKIFCCFLNKEAAYAYDLENNLKLLETKWERLQEKKQDVEAYLEVEENTGEKQRRHQVSGWLKRMESAQKEIKDIQVRGDKQTQENCLSKYCPKYCIASYKLGKNIAGILRKVDELESEGEPFCRDFKIALKHLHKPNEMPCGETVGLDLMFDKVWRSIEETNIGIIGLYGMGGVGKTTLLKKINNNFAKRSDFYIVWVVVSKSPNLDKIMNDIKKEVGIGDEIWSHCSNQDGKAREIYKVLKNKKFVLFLDDIWDRLDLEKVGVPYPKETNFQSKVLFTTRFEDVVSKMKAERTFKIEVLPEKEALELFYMKVGEETLKSSPIIHNIAQKMASKCKGLPLALSVLGSAMAGVKSKEAWQYSINNLTESSWTASPLENEVFFVLKFSYDRLPDEMHKKCFLYCASYPNNYVINVVDLIRLWIAEGFLDIDGMRSLHDMHCHAGSILEKLKCSCLLENYVYDSSSIPYIKIHDVIRDMALWIARDQDKNKNKIIVQEDAQAISQANFENWEMVERISIWDGVESWIQSKSWTSLKTLFLNFESDCAINGLQNIQYASQLKVLHLRRMKIVSAEGLGGLNLLEYLLLGKSVVMNALDLWRELKNLKSLKFFHLELSNDNVIPLGLISSLHQLKLCVFYLNGVRDEREEKKFVEELECSSNLEEVELDITTESGLNELLKSTKLQNCIYVLHLHNVDIQVNGPLLLATMSKMKHLQHLQLHHLQNVIDLSVYDTCRLSALQIVCVFYCNSIHHLTWLKYAPLLRRLVVENCMSIEEVIKGEIILKDEKDTIFPSLEVLVLQILPKLRSIHERVLSFPSLRSIYVSHCKNLKKLPFDSHLAKAKLRHIWGDQEWWDNLEWDDPATKVIFHSKFQQW	882

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g02096	882	FunFam	Probable disease resistance protein At5g66910	310	397	-	-
	Accr1g02096	882	Gene3D	-	141	310	IPR027417	-
	Accr1g02096	882	PRINTS	Disease resistance protein signature	251	265	-	-
	Accr1g02096	882	PRINTS	Disease resistance protein signature	176	191	-	-
	Accr1g02096	882	PRINTS	Disease resistance protein signature	821	837	-	-
	Accr1g02096	882	PRINTS	Disease resistance protein signature	346	360	-	-
	Accr1g02096	882	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	35	841	-	-
	Accr1g02096	882	Gene3D	-	311	397	IPR042197	-
	Accr1g02096	882	Pfam	NB-ARC domain	161	399	IPR002182	GO:0043531
	Accr1g02096	882	Coils	Coil	75	95	-	-
	Accr1g02096	882	Gene3D	Ribonuclease Inhibitor	660	856	IPR032675	-
	Accr1g02096	882	Gene3D	-	398	489	IPR036388	-
	Accr1g02096	882	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	152	413	IPR027417	-
	Accr1g02096	882	Gene3D	Ribonuclease Inhibitor	495	649	IPR032675	-
	Accr1g02096	882	SUPERFAMILY	L domain-like	479	846	-	-
	Accr1g02096	882	SMART	AAA_5	173	312	IPR003593	GO:0016887
	Accr1g02096	882	FunFam	Probable disease resistance protein At1g63360	398	490	-	-
	Accr1g02096	882	Coils	Coil	25	52	-	-
	Accr1g02096	882	FunFam	Probable disease resistance protein At1g61300	140	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g02096	Accr-Chr1	54292194	54296422	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g02096	173	416	WRKY Transcription Factor Family	AT5G45050	24.800	8.92e-08	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g02096	-		K13459	pcin:129315455	603.979