Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02059 ATGAATATGACTCCGGCGAATTTGGCAGGGCAGTTTGGGGACACAACATACACAAAAGTGTTTGTGGGAGGGTTGGCTTGGGAGACTCAGAAGGAGACTATGAAGAAATATTTTGAACAGTTTGGTGAGATCTTGGAGGCTGTCGTCATCACTGACAAAGCTACCGGCAAATCTAAAGGCTATGGATTTGTAACTTTCCGGGAACCAGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTGATTGATGGCAGGAGGGCTAATTGCAACCTTGCTTCTTTGGGCGTCCAGAGATCCAAGCCTTCTACCCCTAAGCATGGAGGAGGAGGCAGGAACTTTAGGGTGATGGGTTCGTTTCAGACAGGATTTGGAGGAGTAGGATCAACTTTTCCTTCTGCAGCAGCACCAACACTTCCTCATTATGCTCTCCAGCAAGGAACACCTTATAATCTCTATGGGTACTCTCCATACTCACCAGATTACACTTACCCTACGGGTTACTATAGTGTGTATGGAGGAGCAACCCAGTACCCACTGTATGGAACTGGACCAGCAGGAGGCATGATGAGCAGTGCCGCCGCTGCGGCCACTGCCATCTACCCATATCTGCAGTTCGGAGAAGGGAGCGGCAGCGGCGTAACTGGCGGCTACACCTCCAGCCAGGGCTACGGTGTCTACTACCCACCACACCTCTTTCAGTACTCTCCCATTACTTCATCTGCTGGTGGTTACCCACAACACTATGGTCCACCCATGTCTCTTGCTCCTTCGCCAGCTTTGCAATCAGGCGTGAAGATGGCTCTTCAAGCTCCACCAATTCCTCATCGTTAG 834 0.5096 MNMTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGVGSTFPSAAAPTLPHYALQQGTPYNLYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPAGGMMSSAAAAATAIYPYLQFGEGSGSGVTGGYTSSQGYGVYYPPHLFQYSPITSSAGGYPQHYGPPMSLAPSPALQSGVKMALQAPPIPHR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02059 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 75 IPR000504 GO:0003723
Accr1g02059 277 SUPERFAMILY RNA-binding domain, RBD 14 114 IPR035979 GO:0003676
Accr1g02059 277 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 12 99 - -
Accr1g02059 277 PANTHER BOULE-RELATED 4 254 - -
Accr1g02059 277 SMART rrm1_1 19 91 IPR000504 GO:0003723
Accr1g02059 277 CDD RRM_RBM24_RBM38_like 18 93 - -
Accr1g02059 277 Gene3D - 4 114 IPR012677 -
Accr1g02059 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02059 Accr-Chr1 53642721 53648762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02059 3 94 C2H2 Transcription Factor Family AT2G19380 39.130 1.03e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02059 - - qsa:O6P43_029953 430.639