Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02054 ATGGTTGTGAACGAGAGGCCGTCCAAGAGGATGAAGAGGCGAGTTTCAGCTGATCTATATGACTTTCTGACTTTTCCGGCTGCCACTGACCGCTGCTTAGACGATGTGGTCGTCGACGGCCAACCGTTCCGGAAAACCGTTCAGCGTTTTCTTACTAATCATGCTATGGTCACCTATCCACCGTCCTTCTTTTCGTCTTTGATGACGTGGCAGATATTGTTCCGGATCGGAGGAGGAGTCGATGGGTCCGATCTTTTACCGACGTCTGTCACCCTCCACATAGTGGAGGAGGACGTAACTCGATCTCGTTCCTCCGTATACTGTGACCAGTGCCGAGTTGTTGGTTGGAGTGGTCATCCTGTATGTAGAAAGCGATATCACTTCATTATCCGAGCTTCAACTAATCACATGGATGCATATGAAAGACCTTGCTCTTTGTGTGGGAAATCTACTGGATTATCTGAACCAAGGTGTAAATGGTGTGACGCCGTGATTACTGTTGAAGATCTTGAGGACTGGGTGTATAGTCAAATTGAAGATAACACTCATCTTCTGCACGGGATTGTCCACTCCAATGGTTATGGCCATTTGCTTACTCTTAATGGTAGAGAGGGTGGTTCAAAGTTTCTCTCTGGCTCTGACATTATGAGTTTCTGGGATAGGCTTTGTGCTTCACTTGCTGTTAGGAAGGTTAGTGTGATGGATGTGTCAAAGAAATTTGGGATGGAATACCGGTTGCTTCATGCAATCACCAATGGGTGTTCTTGGTATGGGAATTGGGGTTATGAATTTGGGACTGGTTGCTATGCCCTCACTCAAGATTCCTACCAAAAGGCAGTGAATACCCTGTCAAGCATGCCCCTATCAGATTTATTATTCCGGGATCGGGGCCCCCCAAGTCGCTTACAGTGTGTTATTTTTCTTTATCAATCTCTGGCAGGTGCTGAACTTTTAACTATAAAAGATCTATTCTCCTTTTTGGTGGCCTTAATTCGTGAGTTCCACAAGCCTTTCCCCACAAGTACTTCGAATGCTGAAACTTGCAATGTGTTGTGTGCTTGGACAAGCAATGATGTCGAAGCTGTGCAACAGGCTTTGATCAAGGTACTGCGTGCATCCACTTCCTCTAGCGGGGCTAAATGGGTGACAAGACGAGCTCTCAAGGGTGCATTAGGTAGGGGTGTTGCATCTCCAGAGCTTCTAGATTACAGTCTGAAACATCTGGGTGGGAAATTAACAGCCTATGGTATGGTAGTTAGGTCAAGATGCAATCCCACATCTAGTGCTGTGGAGTACAGGCTTGAATCCTTGAATGTCACAGAAAATGAAGTTAGTGCGAATACAGGATATCCATCGAAAGAGCAAGTGATTGATGACCTGAAATTCTTGCTTGATACGATTATTCATCCTGATAGGATGGCGAGCTACAGACCCAAGATTATGAGAAAGCGGGTGGCTGATTCGGCAAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACAAGCCTGATAAGATGGTAGGTGAAGAAGTGCCTTCATGTATTAGGCTGTGGTGTCATGTGGAGCTTTCCGATCAGCCAAAAGAAGATCCAACCCCTCCTCCGGAACTGATTTTGCTGCCCTTGAATGCTACTGTTGCCGACCTCAAGAATGAAGCGACCAATACTTTTCAAGAAGTGTATGCCATGTATAAGAGGTTTCAAGCCGAGGAACTTCTGGAATATGGGTCCATCAGGGACAACCTCACCGTGAAGTTACTGCTTGGAACAAGTGGATCCGTCCGAATTTTAGGTAAATGCCATGCTAAACATGGCCTGAACCGCTTCCGAATGGAGAGGGGAACGGAGACGTGGAAAGTTGATTGCCCTTGTGGGGCTAAGGATGATGATGGGGAGAGAATGTTGGCATGTGATATTTGCGGTGTTTGGCAACATACGAGGTGTGCTGGAATTGATAATTCCAATGCTGTTCCCTCTAAGTTCGTATGCATGAGATGCGTCAAATCATACCGCAAGGATGCCAAGAAACAGACTTTCCCCGTTGAACCAAAACTCCACCCTATGGATGAAGCAAAAAACTACGCCGTGCATGATGCAGAGATCCACCCTATGGATAAAGCAAAAAGCTACGTAATGCATGATCCAAACATTCATCCTATGAATGAAGTGAAAAGCTACGCTGTGTATGAAGCACAGGTGCACCCTATGGAGTGTGAAGCAAAGATCCACCCCATGTATGAGGCAAAAAGAGGCATAATGCATGAGCCAAACATCCATCCTATGAATGAAGCAATAAGCTACGCTGTGTATGAAGAAGAGGTTCACCCTATGGTGTATGAAGACAGCTACGCTGTGTCTGAAGCAGAGATTGACCCTGTGGTTGAAGCAAATGTAACTTGGAAGCAGAACGGCCCTGTGGATGGAGCAAGAACCCCAAGTAAAGCAAAAACGTCATGCAGGGGAGAGGTGGTAGCAGCAGATGGTACAGCAGTTGCTTGCAACCTGGCTCTGAATCTTGGCGTTCGCTGA 2532 0.4637 MVVNERPSKRMKRRVSADLYDFLTFPAATDRCLDDVVVDGQPFRKTVQRFLTNHAMVTYPPSFFSSLMTWQILFRIGGGVDGSDLLPTSVTLHIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRASTNHMDAYERPCSLCGKSTGLSEPRCKWCDAVITVEDLEDWVYSQIEDNTHLLHGIVHSNGYGHLLTLNGREGGSKFLSGSDIMSFWDRLCASLAVRKVSVMDVSKKFGMEYRLLHAITNGCSWYGNWGYEFGTGCYALTQDSYQKAVNTLSSMPLSDLLFRDRGPPSRLQCVIFLYQSLAGAELLTIKDLFSFLVALIREFHKPFPTSTSNAETCNVLCAWTSNDVEAVQQALIKVLRASTSSSGAKWVTRRALKGALGRGVASPELLDYSLKHLGGKLTAYGMVVRSRCNPTSSAVEYRLESLNVTENEVSANTGYPSKEQVIDDLKFLLDTIIHPDRMASYRPKIMRKRVADSARKLLDCKQFMKDYKPDKMVGEEVPSCIRLWCHVELSDQPKEDPTPPPELILLPLNATVADLKNEATNTFQEVYAMYKRFQAEELLEYGSIRDNLTVKLLLGTSGSVRILGKCHAKHGLNRFRMERGTETWKVDCPCGAKDDDGERMLACDICGVWQHTRCAGIDNSNAVPSKFVCMRCVKSYRKDAKKQTFPVEPKLHPMDEAKNYAVHDAEIHPMDKAKSYVMHDPNIHPMNEVKSYAVYEAQVHPMECEAKIHPMYEAKRGIMHEPNIHPMNEAISYAVYEEEVHPMVYEDSYAVSEAEIDPVVEANVTWKQNGPVDGARTPSKAKTSCRGEVVAADGTAVACNLALNLGVR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02054 843 CDD PHD_MMD1_like 622 667 - -
Accr1g02054 843 SMART PHD_3 622 668 IPR001965 -
Accr1g02054 843 Pfam PHD-finger 623 669 IPR019787 -
Accr1g02054 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 674 IPR013083 -
Accr1g02054 843 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 676 - -
Accr1g02054 843 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
Accr1g02054 843 SUPERFAMILY FYVE/PHD zinc finger 613 670 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02054 Accr-Chr1 53000128 53003181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02054 87 667 PHD Transcription Factor Family AT5G22260 30.357 6.13e-83 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr1g02054 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02054 K26271 - qsa:O6P43_029942 1002.66