Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02047 ATGGGTTCTTCCAACGGTGGTGTGCCACCGGGTTTCCGGTTTCATCCCACCGACGAGGAGCTTCTCCATTATTACTTGAAGAAGAAGGTGAACTTTCAAAAATTTGACATGGACGTCGTTAGGGAAGTCGACTTGAACAAGATTGAGCCTTGGGACTTGCAAGAGAGGTGTAGAATAGGGTCAACACCACAGAACGAGTGGTATTTCTTCAGCCACAAAGATAGGAAGTATCCAACAGGGTCGAGGACGAACCGGGCAACAAACGCCGGCTTCTGGAAGGCAACGGGGCGAGACAAGTGCATCAGGAACAGCTTCAAGAAGATTGGGATGAGGAAGACTCTGGTCTTCTACAGAGGCAGAGCTCCTCATGGCCATAAGACTGACTGGATCATGCATGAATATCGCCTTGAAGAAGCTGACGATGCTCAACCTAATCCCAATGACGATGGGTGGGTAGTCTGCAGAGTGTTCAAGAAGAAGAACCTATTCAAGATTGGAAATGAAGGAAACTCCATGCATAACACAGACCAACAACTCAACACTTCCTCAAGCATCAACCAACCTCGCTCCTTCATGCACAGTAGAGAAAGCCAGTACTTACTTCTTCATCAACAAAACCCTAGAACCTCATCATCTTCTGGCTTCCAACTCGAAAAACCTGAGCTTGCTCTTCATTACCCTCCTCACTTGCAAAACCCTCAATACTCTCTCTTCCAGGCTCAAGCCCTCCTTCCTCCTGCAACTCACTACACTTCATATTCCTCAGCCCTACCTTCAGACACACCTTCCTTGGCTGCCAAACAACTCATGACAAACCCGGCAGCCACTGGGGACTGCGATAGTGGCGGTGGCGGCAGTGAGGGCTTGAGGTACCAAGTTTCAGAGACTGCAAATATGGAGGTTGGAACTTGTGAACCCACAGGTCATCAAGAGATTGGAACAACAAGAGAAGATCAAGGGTTTAATGAATGGGGTGTGCTTGATAGGCTTGTGGTAACTTCTTCTTCTCATCATCATCATATCGGAAATGAAGAATCATCCAAAGGGGTTAGGTTTGAGGATGCAAATAATCCACAATCTGTTCATCAGATTAATCATCAGCAGCAGCTCTCATTGCGTGGAGAAGTTGACTTTTGGGGCTATGGAAAACAATAA 1155 0.471 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVNFQKFDMDVVREVDLNKIEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGRAPHGHKTDWIMHEYRLEEADDAQPNPNDDGWVVCRVFKKKNLFKIGNEGNSMHNTDQQLNTSSSINQPRSFMHSRESQYLLLHQQNPRTSSSSGFQLEKPELALHYPPHLQNPQYSLFQAQALLPPATHYTSYSSALPSDTPSLAAKQLMTNPAATGDCDSGGGGSEGLRYQVSETANMEVGTCEPTGHQEIGTTREDQGFNEWGVLDRLVVTSSSHHHHIGNEESSKGVRFEDANNPQSVHQINHQQQLSLRGEVDFWGYGKQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02047 384 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Accr1g02047 384 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Accr1g02047 384 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Accr1g02047 384 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 218 - -
Accr1g02047 384 FunFam NAC domain-containing protein 17 163 - -
Accr1g02047 384 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02047 Accr-Chr1 52304065 52308241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02047 1 380 NAC Transcription Factor Family AT1G33280 51.444 2.73e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g02047 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02047 - - gmx:100775746 538.11