Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02004 ATGGCTGAGGAGGAGCCCAAGCCCTTGAACTATATTCCAGAGATTATCTTGAAGAAACGAAAAAGCAGTGAAGCATTGGCCTTGAGGAAAAAGGATCAACTTCAGCAGAAGAAGTTCCAAACAAAGAATTCCAAGGATTATATCAAAAAGCTTGATGATTTCATCATTGAGTATCGAAACAAGGAGCTTGACCTTATTAGAATGAATCGACGGGTCAAGAGGATCAAGAAACAACCAGAGCTATTGAGGCCAAATTCAAATTCGAAGTTGTTATTAATCATTCGGATACAAGGGACAAATGACATGCATCATAAAACCCGAAAGGCCTTAAACCAATTGAATTTGAGAAGAATATTCAGTGCTGTCTTTGTGAAGGCAAGTGTGGGAATCATGGCAAAGCTTCAGAGGGTGGAACCATATGTCACCTATGGGTATCCTAATCTTAAAACCATAAAGGAACTGATCTACAAGAAGGGATTTGCAAAAATAGACAACCAGAAAGTTCCTCTGACAGACAATAACATGATTGAACAGGCATTAGGAAAGTATGGAATTGTGTGCATAGAAGATATGGTCCATGAATTTGTTAATGTTGGTCCACACTTCGAAGAAGTTGCCAGGTTCTTGTGGCCCTTTGAACTCAACAAACCAGCTGATGGCTTGAGAGGATCAAAAGCCTTATACAAGGATGGTGGAGACACGGGGAACCGGGAAGACCTCATCAACGAATTAATCAACAAAATGAATTAA 750 0.3987 MAEEEPKPLNYIPEIILKKRKSSEALALRKKDQLQQKKFQTKNSKDYIKKLDDFIIEYRNKELDLIRMNRRVKRIKKQPELLRPNSNSKLLLIIRIQGTNDMHHKTRKALNQLNLRRIFSAVFVKASVGIMAKLQRVEPYVTYGYPNLKTIKELIYKKGFAKIDNQKVPLTDNNMIEQALGKYGIVCIEDMVHEFVNVGPHFEEVARFLWPFELNKPADGLRGSKALYKDGGDTGNREDLINELINKMN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02004 249 NCBIfam 60S ribosomal protein uL30 13 249 IPR005998 GO:0000463|GO:0003735|GO:0022625
Accr1g02004 249 Gene3D - 193 249 IPR036919 -
Accr1g02004 249 Gene3D - 90 192 IPR036919 -
Accr1g02004 249 Pfam Ribosomal protein L30p/L7e 91 141 IPR016082 -
Accr1g02004 249 PANTHER 60S RIBOSOMAL PROTEIN L7 9 249 IPR039699 -
Accr1g02004 249 SUPERFAMILY Ribosomal protein L30p/L7e 90 249 IPR036919 -
Accr1g02004 249 FunFam 60S ribosomal protein L7 90 194 - -
Accr1g02004 249 Pfam Ribosomal L30 N-terminal domain 13 74 IPR012988 -
Accr1g02004 249 Coils Coil 58 78 - -
Accr1g02004 249 CDD Ribosomal_L7_archeal_euk 90 249 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02004 Accr-Chr1 51101567 51103885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02004 1 249 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 55.378 7.34e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02004 K02937 - qsa:O6P43_017954 360.147