Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01979 ATGGAGAGTGATAATGAAAGTGGGTTGAAGAAGGGGCCATGGACAGCAGAAGAGGACAGAATACTCGTGGATTACATAGAGAAGAATGGACATGGAAGCTGGAGAGCACTTCCCAAGCTGGCAGGATTGAACAGATGTGGCAAAAGTTGCAGACTTAGATGGACTAACTACCTAAGGCCTGACATCAAAAGAGGCAATTTCTCTGACCAAGAACAGCAACTCATCATCAATTTGCATGCTGTCCTTGGCAACAAGTGGTCGACCATAGCAGCTCATCTACCAGGGAGAACTGATAATGAAATAAAAAACTTATGGAATACTCATTTGAAGAAGAAGCTCTTGCAAATGGGATTAGACCCTGTTACTCACCGTCCAAGATCTCAACAACTTAATCTTCTCTCCAATCTCCAACACTTGCTATCTTCTCTCTCACCAAATAATAACCCTAATTATAATCATCATCATTTGGACAACATTCTTAATACCATTCAAACTTTGTCCCCTTCACAACTTGCTAAGCTCCATTTGCTCCACAACTTAATTCAAGTCCTCGCAACTGCTTCTGCTACTGCTGCTACTACAAACCTGCTGGCTCCGTTTAATCTGGACGCACTTGTAAATCCCGGCTCGATGATGGATCAACTTCTCTTACAAGAACATCAAAACATCGGAAATTTTCATTCTCTTTCAAATTTGTCAAATGTTGAGGGTCTTCTTCATCATCATCATCAGCAGCAGCAGCAACAGCAGCATCTACCAGTGAGTGATGGTCTTGAGCTTCTTAAGGTAATGCCATGTTTGGCTGATCCGGTAGCATCGGCTTCGAGTTCGCTTCCCAATCTGGTTTCACCCACGCCTGATTGCTCCCCATCACCATCTTCTTTTAACAAAATGAAAGACAAGGTAATAAACCAAAACGATGGCACTCCTAATCCTTCTACTTCAACAAGTACCTTTGATACTTTGGGAGATTTTATGGACGAACAAGCAAGTGAAGCTTTCTGGAAACATCTTATTGACCAAGAATCTAACCAGCCATGGTCAATCTCATAA 1053 0.4217 MESDNESGLKKGPWTAEEDRILVDYIEKNGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGNFSDQEQQLIINLHAVLGNKWSTIAAHLPGRTDNEIKNLWNTHLKKKLLQMGLDPVTHRPRSQQLNLLSNLQHLLSSLSPNNNPNYNHHHLDNILNTIQTLSPSQLAKLHLLHNLIQVLATASATAATTNLLAPFNLDALVNPGSMMDQLLLQEHQNIGNFHSLSNLSNVEGLLHHHHQQQQQQQHLPVSDGLELLKVMPCLADPVASASSSLPNLVSPTPDCSPSPSSFNKMKDKVINQNDGTPNPSTSTSTFDTLGDFMDEQASEAFWKHLIDQESNQPWSIS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01979 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Accr1g01979 350 FunFam Transcription factor MYB39 66 127 - -
Accr1g01979 350 SMART sant 10 60 IPR001005 -
Accr1g01979 350 SMART sant 63 111 IPR001005 -
Accr1g01979 350 Gene3D - 66 113 - -
Accr1g01979 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Accr1g01979 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 241 - -
Accr1g01979 350 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Accr1g01979 350 Gene3D - 10 63 - -
Accr1g01979 350 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Accr1g01979 350 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Accr1g01979 350 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Accr1g01979 350 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Accr1g01979 350 CDD SANT 66 109 IPR001005 -
Accr1g01979 350 CDD SANT 13 58 IPR001005 -
Accr1g01979 350 MobiDBLite consensus disorder prediction 275 321 - -
Accr1g01979 350 FunFam MYB-related transcription factor 10 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01979 Accr-Chr1 50494958 50497512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01979 5 340 MYB Transcription Factor Family AT5G16770 46.377 4.65e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr1g01979 Myb_DNA-binding 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01979 K09422 - tcc:18599533 306.99