Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01971 ATGGATAGTGACAGCTCGCAATCTTGCTCATTGTGCAGGCACAAAGGTAGGATATGCCAAGAGGAATGTGAATACAGGCAGATTTTCCCAGGAAATAGGTACCAAGAGTTTGAGAAAGCGAAGTGGCTGTTTGGTTTGAAAAACATGCTCGCAATAATTCAAAGTGTGGAGGTAGATCAAAGACAAGTTGCTGCAGATTCTATGTTCATGGAGGCTAATGCCTGGAGGAACCACCCTGTTGAAGGGGCTCTTGGCTTTGCTTCTGACCTCATTTCTCAGATTCACTCTCTCTTCAATCAACTTCAAGCAGCTAAACAACAACTTGAGATCTTCAAGCTTCAAGATGATGATGATAATAATGGCCTTCAAACAGTGCCTATTTCTTCTTCACCATTTGCTGCTTCTTCCTCCTCCTCTTCTGGAATTCCTGTGCAACCTAGCCAGCTTCATCGTTCTGCTGAAATATGCAGTACTATTATGGAAGGGATTGTGTCGTGTGAAGAAGTGAAGCCATTAGATGTCCATCAAATCACGAGCCTCCTTCAATATTACAGGCGTGGGAGGGGTCGACAAACCAGCAACGAGACTAAGGTGCAAAACCAGGATCAAAGGAATGCTGTTGGGAGAGATGGAGAAATTGCGAATGCAGAAGTTTCAGAAGATGAAAATTAG 672 0.4375 MDSDSSQSCSLCRHKGRICQEECEYRQIFPGNRYQEFEKAKWLFGLKNMLAIIQSVEVDQRQVAADSMFMEANAWRNHPVEGALGFASDLISQIHSLFNQLQAAKQQLEIFKLQDDDDNNGLQTVPISSSPFAASSSSSSGIPVQPSQLHRSAEICSTIMEGIVSCEEVKPLDVHQITSLLQYYRRGRGRQTSNETKVQNQDQRNAVGRDGEIANAEVSEDEN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01971 223 MobiDBLite consensus disorder prediction 188 223 - -
Accr1g01971 223 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Accr1g01971 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 145 - -
Accr1g01971 223 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Accr1g01971 223 Coils Coil 87 114 - -
Accr1g01971 223 MobiDBLite consensus disorder prediction 188 206 - -
Accr1g01971 223 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01971 Accr-Chr1 50354786 50358175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01971 6 108 AS2 family AT3G50510 34.951 1.30e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr1g01971 LOB 6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01971 - K03386 pcin:129316440 233.802