Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01939 ATGGTCAACTGTGATACTAAGGATATTTATATCACACACTTGTCTGGGAAGAAACACCTGAGAAACCTGAAAAAAGTATCTAAATTAGAAAGTGATGGCGCCGGTGCTGCTGCTGATGTCAGTGTAGCTTGTATCTCTGCAGCCATTGTAACAGAAAATGATAAGCAACCGGCATCGAATCCAGCAGCTATTGGGACACAAGAAAATCCAGGCACTAATGAACAAGAATGTATCAATTCTTGTCAACCAGAAAAGACAGTCATATTAGAAGCTCAAGAAAAGGACACTGAGACAAAGAAACAGTCTGAATCAAAAGGTGATGGTGCCGGCGCTGATGTCAGCATACCTGGCGTGACTGCAGCCATCGTAGCAGAAAATGATAAGCAACCAGTGACAAATCCAGCTATTGAGTCACAAGAAAAGCCAGGCACTAATGAACAAGAATGTATCAATTCATGTCAACCAGAAAATACAGTCATATTAGAAGCTCAAGAAAAGGACACTGAGACAAAGAAACAGTCTGAATCAAAAGATGATGGTGCCGGCGCTGATGTCAGCATACCTGGCGTGACTGCAGCCATCGTAGCAGAAAATGATAAGCAACCAGTGACAAATCCAGCTATTGAGTCACAAGAAAAGCCTGGCACTAATAAACAAGAATGTGTCAATTCATGTCAACCAGAAATTGCAGTCATATTAGAAGCTCCAGAAATGGACACTGAATCAAAGAAACGAAGGCATGAACTTGATGGTGGGACTTCTAAAGCCTCTATCGAGCCTGGCACTCTATCTAATGCCAACAATGAGACAGTCTTTAATTTGCCTGATTACCCTGCTCAGTGTGAAATCTGCATGATTAATTGTAATAGCAAGCCTGTTTATATCAGACATATATCAGGGAAGAGACACAAGAGGAACATGGAGAAAGTATCAAAATCAAAAAATGATGTGGCTGGTGCTAGTGTAGCCGATGCTGTTTCGGCCATTATGCCAGCAATTGATGCGCAACAAGCAACGAATCAAGCAATTGAGCCACAAGAAAAGCTGGAGACTAGTGTACGAGAAGGGGTGGTTGCGCTTACATTGGGAAGTGTGGTCATGTTGGAGGCTTCAGAAAAGGATATGGAAACAAAGAGACGTAAAATTGAACCTTTAGATGGGGCTGCAACTACTTCTTTCAGAGTGTGCAAGCTATGCAATGCGCCGTGCAACAGCGAGGTAGACTTTAATTCTCACCTCCAAGGGAAGAAACATGCTGCAATGGTGAAGAAGCTGGCAAATTCTAACAAGTAG 1293 0.4254 MVNCDTKDIYITHLSGKKHLRNLKKVSKLESDGAGAAADVSVACISAAIVTENDKQPASNPAAIGTQENPGTNEQECINSCQPEKTVILEAQEKDTETKKQSESKGDGAGADVSIPGVTAAIVAENDKQPVTNPAIESQEKPGTNEQECINSCQPENTVILEAQEKDTETKKQSESKDDGAGADVSIPGVTAAIVAENDKQPVTNPAIESQEKPGTNKQECVNSCQPEIAVILEAPEMDTESKKRRHELDGGTSKASIEPGTLSNANNETVFNLPDYPAQCEICMINCNSKPVYIRHISGKRHKRNMEKVSKSKNDVAGASVADAVSAIMPAIDAQQATNQAIEPQEKLETSVREGVVALTLGSVVMLEASEKDMETKRRKIEPLDGAATTSFRVCKLCNAPCNSEVDFNSHLQGKKHAAMVKKLANSNK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01939 430 Gene3D Classic Zinc Finger 387 429 - -
Accr1g01939 430 MobiDBLite consensus disorder prediction 166 185 - -
Accr1g01939 430 MobiDBLite consensus disorder prediction 131 148 - -
Accr1g01939 430 MobiDBLite consensus disorder prediction 54 76 - -
Accr1g01939 430 PANTHER ZINC FINGER PROTEIN 385B-LIKE 279 428 - -
Accr1g01939 430 MobiDBLite consensus disorder prediction 94 113 - -
Accr1g01939 430 MobiDBLite consensus disorder prediction 239 262 - -
Accr1g01939 430 Gene3D Classic Zinc Finger 263 310 - -
Accr1g01939 430 SMART c2h2final6 394 418 IPR013087 -
Accr1g01939 430 SMART c2h2final6 279 303 IPR013087 -
Accr1g01939 430 SUPERFAMILY beta-beta-alpha zinc fingers 392 425 IPR036236 -
Accr1g01939 430 Pfam Zinc-finger of C2H2 type 396 418 - -
Accr1g01939 430 Pfam Zinc-finger of C2H2 type 280 303 - -
Accr1g01939 430 MobiDBLite consensus disorder prediction 239 253 - -
Accr1g01939 430 MobiDBLite consensus disorder prediction 127 148 - -
Accr1g01939 430 SUPERFAMILY beta-beta-alpha zinc fingers 270 310 IPR036236 -
Accr1g01939 430 SMART ZnF_U1_5 391 425 IPR003604 GO:0003676|GO:0008270
Accr1g01939 430 SMART ZnF_U1_5 276 310 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01939 Accr-Chr1 49933962 49935254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01939 278 422 C2H2 Transcription Factor Family AT5G61190 30.137 4.26e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01939 - - pcin:129315651 282.722