Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01938 ATGCTTCATCAGCCCCATACTTCCCTCGCTCCTCGTAAAGTACTCTTATCGCTGCCTCAACCATCACTTGCCTCGTCCCTGTTTCCCAACCCTTCTGCTGTCAGTGGCAGCTCGACAGATTCTCCGGACGTGCCTTCAAATTGTCAGAATTTCATCGTCTATCAGGCTGTCGAAAATTCTCAAGGGACTTCCGACGTGCCCACAACCTTTTTTAATCCGTGGAGGGACGGTTCTGTGTGTCAAGTTGACCGAACGAAAATAAAAAACCCAGTGCGATGTGAGGTTTGCAAAATTGATTTTAATAGCAAGTGTGTGTTTGAGGAACACATATCAGGAAAGAAGCACAGGAAGAAAATGCAATTGCACAGTAATCCTAGCAACACAATTTTATCTGGAACCTCAAATGTGAAGAATGTTCAAGTCCAAGACTGTAGTGTCCAAGGACAAGAGCCATTTGTTGATGCAGGCAAGGATTTAAAGTTTAAGAAACGGAAGCTTTTGAGTGGGGGTGAAGCAGAGCATAATGATCAGGTTGACTTGACATCTAATAATGATGGGATTGGTTCGAAGAAAGTCAAGGTTACTCAATGTACACGATGTGAAATTTGCATGGTCAACTGTGATACTAAGGATATTTATATCACACACTTGTCTGGGAAGAAACACCTGAGAAACCTGAAAAAAGTATCTAAATTAGAAAGTGATGTCGCCGGTGCTGCTGCTGATGTCAGTGTAGCTTGTATCTCTGCAGCCATTGTAACAGAAAATGATAAGCAACCGGCATCGAATCCAGCAGCTATTGGGACACAAGAAAATCCAGGCACTAATGAACAAGAATGTATCAATTCATGTCAACCAGAAAATACAGTCATATTAGAAGCTCAAGAAAAGGACACTGAGACAAAGAAACAGTCTAAATCAAAAGGTGATGGTGCCGGCGCTGATGTCAGCATACCTGGCGTGACTGCAGCCATCGTAGCAGAAAATGATAAGCAACCAGCGAAAAATCCAGCTATTGAGTCACAAGAAAAGCCTGGCACTAATAAACAAGAATGTGTCAATTCATGTCAACCAGAAAATGCAGTCATATTAGAAGCTCCAGAAAAGGACACTGAATCAAAGAAACGGAGGCATGAACTTGATGGTGGGACTTCTAAAGCCTCTATCGAGCCTGGCACTCTATCTAATGCCAACAATGAGACAGTCTTTAATTTGCCTGATTACCCTGCTCAGTGTGAAATCTGCATGATTAATTGTAATAGCAAGCCTGTTTATATCAGACATATATCAGGGAAGAGACACAAGAGGAACATGGAGAAAGTATCAAAATCAAAAAATGACGGGGCTGGTGCTAGTGTAGCCGATGCTGTTTCGGCCATTATGCCAGCAATTGATGTGCAACAAGCAACGAATCAAGCAATTGAGCCACAAGAAAAGCTGGAGACTAGTGTACGAGAAGGGGTGGTTGCGCTTACATTGGGAAGTGTGGTCATGTTGGAGGCTTCAGAAAAGGATATGGAAACAAAGAGACGTAAAATTGAACCTTTTGATGGGGCTGCAACTACTTCTTTCAGAGTGTGCAAGCTATGCAATGCGCCATGCAACAGCGAGGCAGACTTTAATTCTCACCTCCAAGGGAAGAAACATGCTGCAATGGTTGACTTGACATCTAATGATGATGGGATTGGTTTGAAGAAAGTCAAGGTTACTCAATGTACACGATGTGAAATTTGCATGGTCAACTGTGATACTAAGGATATTTATATCACACACTTGTCTGGGAAGAAACACCTGAGAAACCTGAAAAAAGTATCTAAATTAGAAAGTGATGGCGCCGGTGCTGCTGCTGATGTCAGTGTAGCTTGTATCTCTGCAGCCATTGTAACAGAAAATGATAAGCAACCGGCATCGAATCCAGCAGCTATTGGGACACAAGAAAATCCAGGCACTAATGAACAAGAATGTATCAATTCTTGTCAACCAGAAAAGACAGTCATATTAGAAGCTCAAGAAAAGGACACTGAGACAAAGAAACAGTCTGAATCAAAAGGTGATGGTGCCGGCGCTGATGTCAGCATACCTGGCGTGACTGCAGCCATCGTAGCAGAAAATGATAAGCAACCAGTGACAAATCCAGCTATTGAGTCACAAGAAAAGCCAGGCACTAATGAACAAGAATGTATCAATTCATGTCAACCAGAAAATACAGTCATATTAGAAGCTCAAGAAAAGGACACTGAGACAAAGAAACAGTCTGAATCAAAAGATGATGGTGCCGGCGCTGATGTCAGCATACCTGGCGTGACTGCAGCCATCGTAGCAGAAAATGATAAGCAACCAGTGACAAATCCAGCTATTGAGTCACAAGAAAAGCCTGGCACTAATAAACAAGAATGTGTCAATTCATGTCAACCAGAAATTGCAGTCATATTAGAAGCTCCAGAAATGGACACTGAATCAAAGAAACGAAGGCATGAACTTGATGGTGGGACTTCTAAAGCCTCTATCGAGCCTGGCACTCTATCTAATGCCAACAATGAGACAGTCTTTAATTTGCCTGATTACCCTGCTCAGTGTGAAATCTGCATGATTAATTGTAATAGCAAGCCTGTTTATATCAGACATATATCAGGGAAGAGACACAAGAGGAACATGGAGAAAGTATCAAAATCAAAAAATGATGTGGCTGGTGCTAGTGTAGCCGATGCTGTTTCGGCCATTATGCCAGCAATTGATGCGCAACAAGCAACGAATCAAGCAATTGAGCCACAAGAAAAGCTGGAGACTAGTGTACGAGAAGGGGTGGTTGCGCTTACATTGGGAAGTGTGGTCATGTTGGAGGCTTCAGAAAAGGATATGGAAACAAAGAGACGTAAAATTGAACCTTTAGATGGGGCTGCAACTACTTCTTTCAGAGTGTGCAAGCTATGCAATGCGCCGTGCAACAGCGAGGTAGACTTTAATTCTCACCTCCAAGGGAAGAAACATGCTGCAATGGTGAAGAAGCTGGCAAATTCTAACAAGTAG 3027 0.4265 MLHQPHTSLAPRKVLLSLPQPSLASSLFPNPSAVSGSSTDSPDVPSNCQNFIVYQAVENSQGTSDVPTTFFNPWRDGSVCQVDRTKIKNPVRCEVCKIDFNSKCVFEEHISGKKHRKKMQLHSNPSNTILSGTSNVKNVQVQDCSVQGQEPFVDAGKDLKFKKRKLLSGGEAEHNDQVDLTSNNDGIGSKKVKVTQCTRCEICMVNCDTKDIYITHLSGKKHLRNLKKVSKLESDVAGAAADVSVACISAAIVTENDKQPASNPAAIGTQENPGTNEQECINSCQPENTVILEAQEKDTETKKQSKSKGDGAGADVSIPGVTAAIVAENDKQPAKNPAIESQEKPGTNKQECVNSCQPENAVILEAPEKDTESKKRRHELDGGTSKASIEPGTLSNANNETVFNLPDYPAQCEICMINCNSKPVYIRHISGKRHKRNMEKVSKSKNDGAGASVADAVSAIMPAIDVQQATNQAIEPQEKLETSVREGVVALTLGSVVMLEASEKDMETKRRKIEPFDGAATTSFRVCKLCNAPCNSEADFNSHLQGKKHAAMVDLTSNDDGIGLKKVKVTQCTRCEICMVNCDTKDIYITHLSGKKHLRNLKKVSKLESDGAGAAADVSVACISAAIVTENDKQPASNPAAIGTQENPGTNEQECINSCQPEKTVILEAQEKDTETKKQSESKGDGAGADVSIPGVTAAIVAENDKQPVTNPAIESQEKPGTNEQECINSCQPENTVILEAQEKDTETKKQSESKDDGAGADVSIPGVTAAIVAENDKQPVTNPAIESQEKPGTNKQECVNSCQPEIAVILEAPEMDTESKKRRHELDGGTSKASIEPGTLSNANNETVFNLPDYPAQCEICMINCNSKPVYIRHISGKRHKRNMEKVSKSKNDVAGASVADAVSAIMPAIDAQQATNQAIEPQEKLETSVREGVVALTLGSVVMLEASEKDMETKRRKIEPLDGAATTSFRVCKLCNAPCNSEVDFNSHLQGKKHAAMVKKLANSNK 1008
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01938 1008 SUPERFAMILY beta-beta-alpha zinc fingers 848 887 IPR036236 -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 707 727 - -
Accr1g01938 1008 Gene3D Classic Zinc Finger 177 229 - -
Accr1g01938 1008 Gene3D Classic Zinc Finger 559 604 - -
Accr1g01938 1008 Gene3D Classic Zinc Finger 394 441 - -
Accr1g01938 1008 Gene3D Classic Zinc Finger 841 888 - -
Accr1g01938 1008 Gene3D Classic Zinc Finger 501 556 - -
Accr1g01938 1008 Gene3D Classic Zinc Finger 78 123 - -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 366 384 - -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 817 831 - -
Accr1g01938 1008 SUPERFAMILY beta-beta-alpha zinc fingers 970 1003 IPR036236 -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 817 840 - -
Accr1g01938 1008 SUPERFAMILY beta-beta-alpha zinc fingers 189 229 IPR036236 -
Accr1g01938 1008 SMART c2h2final6 525 549 IPR013087 -
Accr1g01938 1008 SMART c2h2final6 198 222 IPR013087 -
Accr1g01938 1008 SMART c2h2final6 91 115 IPR013087 -
Accr1g01938 1008 SMART c2h2final6 972 996 IPR013087 -
Accr1g01938 1008 SMART c2h2final6 857 881 IPR013087 -
Accr1g01938 1008 SMART c2h2final6 410 434 IPR013087 -
Accr1g01938 1008 SMART c2h2final6 573 597 IPR013087 -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 709 727 - -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 329 353 - -
Accr1g01938 1008 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Accr1g01938 1008 Gene3D Classic Zinc Finger 965 1007 - -
Accr1g01938 1008 PANTHER OS06G0651300 PROTEIN-RELATED 799 1005 - -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 297 316 - -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 634 655 - -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 366 393 - -
Accr1g01938 1008 SUPERFAMILY beta-beta-alpha zinc fingers 401 440 IPR036236 -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 672 691 - -
Accr1g01938 1008 SUPERFAMILY beta-beta-alpha zinc fingers 523 555 IPR036236 -
Accr1g01938 1008 Pfam Zinc-finger of C2H2 type 858 881 - -
Accr1g01938 1008 Pfam Zinc-finger of C2H2 type 527 549 - -
Accr1g01938 1008 Pfam Zinc-finger of C2H2 type 974 996 - -
Accr1g01938 1008 Pfam Zinc-finger of C2H2 type 411 434 - -
Accr1g01938 1008 Pfam Zinc-finger of C2H2 type 574 597 - -
Accr1g01938 1008 Pfam Zinc-finger of C2H2 type 92 115 - -
Accr1g01938 1008 Pfam Zinc-finger of C2H2 type 199 222 - -
Accr1g01938 1008 MobiDBLite consensus disorder prediction 744 763 - -
Accr1g01938 1008 SMART ZnF_U1_5 407 441 IPR003604 GO:0003676|GO:0008270
Accr1g01938 1008 SMART ZnF_U1_5 969 1003 IPR003604 GO:0003676|GO:0008270
Accr1g01938 1008 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Accr1g01938 1008 SMART ZnF_U1_5 88 122 IPR003604 GO:0003676|GO:0008270
Accr1g01938 1008 SMART ZnF_U1_5 854 888 IPR003604 GO:0003676|GO:0008270
Accr1g01938 1008 SMART ZnF_U1_5 522 556 IPR003604 GO:0003676|GO:0008270
Accr1g01938 1008 SMART ZnF_U1_5 570 604 IPR003604 GO:0003676|GO:0008270
Accr1g01938 1008 SUPERFAMILY beta-beta-alpha zinc fingers 86 122 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr1g01938 Accr-Chr1 49933962 49938728 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01938 507 601 C2H2 Transcription Factor Family AT5G61190 27.723 1.08e-06 50.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01938 - - pcin:129315651 397.127