LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g01934	ATGAATTTGTGTGCAGTTGCTGTTTTGAGATCTTTAAAGGATATGTGGGAAAATACACCACCCAGTTGGGATAAATCGGATGACCCCTGTGGAGCACCTTGGGAAGGAGTCACCTGCAACAGATCCAGAGTCACTTCACTGGGATTGTCAACTATGGGCCTACAAGGGAAACTAAGTGGAGACATTGGAGGTCTCACTGAATTGAGATCCTTGGACTTGTCGTTTAACAGAGGCTTGAAGGGTCCTCTGTCTCCAAAATTGGGAGACCTAAGAAATCTAAATATATTGATTTTGGCTGGTTGCAGCTTCAGTGGCAAAATCCCAGATGAATTGGGAAATCTCTCCGAGCTCTCTTTCTTGGCATTAAATTCAAATAACTTGTCTGGAGGAATACCAGCTTCATTGGGTAATCTGTCCAAATTATATTGGCTGGACTTAGCAGACAATCAAATATCAGGGCCAATTCCTGTGTCGACTTCCACATCTCCTGGACTAGACATGCTTTTAAAGGCCAAGCACTTCCATTTCAATAAGAACCAGCTTTCAGGTCCCATTTCACCAAACCTTTTCAGCTCTCAGATGGTACTCATTCATGTGTTGTTTGATGGGAATCGTTTGACAGGCACAATTCCATCAACATTAGGATTAGTTCAAACACTTGAAGTTCTTCGGCTTGATAGAAATTTGTTGGTTGGAGAAGTCCCCTCAAATCTCAACAACCTAACCAACCTCAATGAACTGAATCTAGCACATAATAAATTGACAGGTCCTTTACCAGATTTGTCTCAGATGGGTACCCTCAATTACGTGGATCTGAGTAACAATGTTTTTGATCCTTCTCAACCACCAAATTGGTTCCAAACTTCACCATCACTTACCACTCTAATTATGGAGTTTGGATCACTTGAAGGTCCTTTGCCATCAAAACTCTTCAGCAGCCCCCAAATACAACAAGTGAAATTAAAGCACAATGCATTGAACAACACTTTGGACATGGGTGACATCATCAGCCCTCAATTACAGCTTGTAGATTTACAAGACAACCAGATTACTTCAGTAACTCTCAGTTCTGGATACAAAAATACACTGATTTTGATTGGAAATCCAGTGTGCCTTACTGCTCTCTCAAACACCAATTACTGTCAACTTCAACAACAACCGAAAAAGCCTTACTCTACCAGCTTGGCTAATTGTGGAAGCAAATCATGTCCTGCTGATCAGAAATTAAGCCCACAAAGTTGTGAATGTGCCTACCCATATGAAGGAATTTTATACTTCAGAGGACCCTTGTTTAGAGAATTGTCTAATGCAAATACATTTCATTCTCTTGAGATGAGCTTGTGGGTGAAATTAGGCCTCACTCCTGGTTCAGTTTCTTTACAGAACCCATTTTTCAACAGTGATGATTATCTCCAAGTGCAATTAGCGCTCTTCCCACCGGCAGGAACATACTTCAATAGGTCAGATGTTCAAAGAATTGGATTTCAATTAAGTAATCAAACTTACAAGCCACCCCCAGAGTTTGGACCATATTACTTCATTGCTTTTCCTTATGCTTTCCCAGAATCCCGGGGAGCAAATTCTCTAAGCAAGCCTGTGGTCATTGGGATAGCAGTTGGCTGCTCACTTCTGGTTTTGAGCCTGGTAGGGCTAGGGATATATGCCATTATACAAAAGAAACGCGCAGAGAAAGCCATTGTGCTAAGCAGGCCTTTCGCATCATGGACACCTAGCGGGAAGGATAGTGGAGGAGCTCCCCAACTAAAAGGAGCAAGATGGTTTTCTTATGATGAACTCAAAAAGTGCACCTCAAATTTCTCCCATAACAATGAGTTAGGATTTGGAGGTTATGGCAAGGTGTACAAAGGGGTGCTTCCTGATGGACAAATGGTTGCAATAAAACGAGCCCAACAGGGATCAATGCAAGGAGGACTTGAGTTCAAGACTGAAATTGAATTGCTTTCACGAGTTCATCACAAGAATCTTGTTGCTCTTGTAGGCTTCTGCTTTGAACAAGGAGAGCAAATGTTGGTCTATGAATATATTCCCAATGGAACACTCAGAGATTGTCTATGTGGGAGAGTTGGGATTTATCTAGACTGGAAGAGGAGGCTAAGAATTGCTCTTGGGTCAGCGAGAGGACTTGCTTACTTACATGAACTTGCTAACCCTCCCATAATTCATAGAGATGTCAAGTCCTCTAATATCTTGCTAGATGAGAATTTGACAGCAAAAGTTGCAGATTTTGGCTTATCAAAGTTAGCAACAGATAGTGGAAAAGGCCATGTTTCCACTCAGGTTAAAGGCACATTGGGATATCTTGATCCTGAATATTACATGACACAACAATTGACCGAGAAGAGTGATGTCTATAGTTTCGGGGTGGTGATGCTTGAACTCATAACCGGGAGGCAACCTATTGAGAAAGGAAAGTACATTGTGCGTGAAGTGAGATCCCTGATAAACAAGAATGATCAAGAGTACTGTGGTTTAAGGGAACTTGTGGATCCAGTGGTTATGGAAACTTGTAATCTTGGTGGGTTCCGTACATTCTTGGATCTCTCAATGCAATGTGTTGAGGAATCAGCTAGAGATCGTCCCACAATGAGTGAAGTTGTGAAAGCTCTTGAGATCGTTCTGCAAAATGATGGCTTGAACACAAATTCCACTTCTGCTTCCTCTTCTGCAACAGACTTTGCACTTTCTAAGACTTCTCTCACGCATCCTTATATGGATACTTTCAGCAGAAAGGACACTAATGAGACCAATGCTTTTGACTACAGTGGTGGCTACTCACTTCCTGCAAAAATTGAGCCTAAATAG	2823	0.4183	MNLCAVAVLRSLKDMWENTPPSWDKSDDPCGAPWEGVTCNRSRVTSLGLSTMGLQGKLSGDIGGLTELRSLDLSFNRGLKGPLSPKLGDLRNLNILILAGCSFSGKIPDELGNLSELSFLALNSNNLSGGIPASLGNLSKLYWLDLADNQISGPIPVSTSTSPGLDMLLKAKHFHFNKNQLSGPISPNLFSSQMVLIHVLFDGNRLTGTIPSTLGLVQTLEVLRLDRNLLVGEVPSNLNNLTNLNELNLAHNKLTGPLPDLSQMGTLNYVDLSNNVFDPSQPPNWFQTSPSLTTLIMEFGSLEGPLPSKLFSSPQIQQVKLKHNALNNTLDMGDIISPQLQLVDLQDNQITSVTLSSGYKNTLILIGNPVCLTALSNTNYCQLQQQPKKPYSTSLANCGSKSCPADQKLSPQSCECAYPYEGILYFRGPLFRELSNANTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPAGTYFNRSDVQRIGFQLSNQTYKPPPEFGPYYFIAFPYAFPESRGANSLSKPVVIGIAVGCSLLVLSLVGLGIYAIIQKKRAEKAIVLSRPFASWTPSGKDSGGAPQLKGARWFSYDELKKCTSNFSHNNELGFGGYGKVYKGVLPDGQMVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVALVGFCFEQGEQMLVYEYIPNGTLRDCLCGRVGIYLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLATDSGKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITGRQPIEKGKYIVREVRSLINKNDQEYCGLRELVDPVVMETCNLGGFRTFLDLSMQCVEESARDRPTMSEVVKALEIVLQNDGLNTNSTSASSSATDFALSKTSLTHPYMDTFSRKDTNETNAFDYSGGYSLPAKIEPK	940

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g01934	940	FunFam	Leucine-rich repeat protein kinase family protein	574	681	-	-
	Accr1g01934	940	SUPERFAMILY	Protein kinase-like (PK-like)	591	901	IPR011009	-
	Accr1g01934	940	SMART	serkin_6	606	879	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01934	940	Gene3D	Phosphorylase Kinase; domain 1	580	681	-	-
	Accr1g01934	940	FunFam	Leucine-rich repeat family protein	5	160	-	-
	Accr1g01934	940	Gene3D	Ribonuclease Inhibitor	163	386	IPR032675	-
	Accr1g01934	940	PANTHER	RECEPTOR-LIKE PROTEIN 55	10	880	-	-
	Accr1g01934	940	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	682	892	-	-
	Accr1g01934	940	Pfam	Protein tyrosine and serine/threonine kinase	609	876	IPR001245	GO:0004672\|GO:0006468
	Accr1g01934	940	ProSiteProfiles	Protein kinase domain profile.	606	880	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01934	940	Gene3D	Ribonuclease Inhibitor	6	162	IPR032675	-
	Accr1g01934	940	SUPERFAMILY	L domain-like	21	381	-	-
	Accr1g01934	940	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	726	738	IPR008271	GO:0004672\|GO:0006468
	Accr1g01934	940	FunFam	Predicted protein	163	384	-	-
	Accr1g01934	940	ProSiteProfiles	Leucine-rich repeat profile.	243	265	IPR001611	GO:0005515
	Accr1g01934	940	ProSitePatterns	Protein kinases ATP-binding region signature.	612	634	IPR017441	GO:0005524
	Accr1g01934	940	Pfam	Leucine rich repeat N-terminal domain	7	40	IPR013210	-
	Accr1g01934	940	CDD	STKc_IRAK	612	877	-	-
	Accr1g01934	940	Gene3D	Transferase(Phosphotransferase) domain 1	682	900	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g01934	Accr-Chr1	49907807	49915163	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g01934	6	940	Receptor kinase-like Gene Family	AT1G79620	72.066	0.0	1413

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Accr1g01934		PK_Tyr_Ser-Thr	3.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g01934	-		-	gmx:100792249	1518.06