LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g01933	ATGGCGATGATACTTCGCACGTTGCTTTTTCTGGGATTTTGGTCGGTTCAGATTCATTTGATCTTCTCTTTTACTGATCCTCAAGATGTTGCTGTTTTGAGATCTTTAAAGGATATGTGGGAAAATACACCACCCAGTTGGGATAAATCGGATGACCCCTGTGGAGCACCTTGGGAAGGAGTCACCTGCAACAGATCCAGAGTCACTTCACTGGGATTGTCAACTATGGGCCTACAAGGGAAACTAAGTGGAGACATTGGAGGTCTCACTGAATTGAGATCCTTGGACTTGTCGTTTAACAGAGGCTTGAAGGGTCCTCTGTCTCCAAAATTGGGAGACCTAAGAAATCTAAATATATTGATTTTGGCTGGTTGCAGCTTCAGTGGCAAAATCCCAGATGAATTGGGAAATCTCTCCGAGCTCTCTTTCTTGGCATTAAATTCAAATAACTTGTCTGGAGGAATACCAGCTTCATTGGGTAATCTGTCCAAATTATATTGGCTGGACTTAGCAGACAATCAAATATCAGGGCCAATTCCTGTGTCGACTTCCACATCTCCTGGACTAGACATGCTTTTAAAGGCCAAGCACTTCCATTTCAATAAGAACCAGCTTTCAGGTCCCATTTCACCAAACCTTTTCAGCTCTCAGATGGTACTCATTCATGTGTTGTTTGATGGGAATCGTTTGACAGGCACAATTCCATCAACATTAGGATTAGTTCAAACACTTGAAGTTCTTCGGCTTGATAGAAATTTGTTGGTTGGAGAAGTCCCCTCAAATCTCAACAACCTAACCAACCTCAATGAACTGAATCTAGCACATAATAAATTGACAGGTCCTTTACCAGATTTGTCTCAGATGGGTACCCTCAATTACGTGGATCTGAGTAACAATGTTTTTGATCCTTCTCAACCACCAAATTGGTTCCAAACTTCACCATCACTTACCACTCTAATTATGGAGTTTGGATCACTTGAAGGTCCTTTGCCATCAAAACTCTTCAGCAGCCCCCAAATACAACAAGTGAAATTAAAGCACAATGCATTGAACAACACTTTGGACATGGGTGACATCATCAGCCCTCAATTACAGCTTGTAGATTTACAAGACAACCAGATTACTTCAGTAACTCTCAGTTCTGGATACAAAAATACACTGATTTTGATTGGAAATCCAGTGTGCCTTACTGCTCTCTCAAACACCAATTACTGTCAACTTCAACAACAACCGAAAAAGCCTTACTCTACCAGCTTGGCTAATTGTGGAAGCAAATCATGTCCTGCTGATCAGAAATTAAGCCCACAAAGTTGTGAATGTGCCTACCCATATGAAGGAATTTTATACTTCAGAGGACCCTTGTTTAGAGAATTGTCTAATGCAAATACATTTCATTCTCTTGAGATGAGCTTGTGGGTGAAATTAGGCCTCACTCCTGGTTCAGTTTCTTTACAGAACCCATTTTTCAACAGTGATGATTATCTCCAAGTGCAATTAGCGCTCTTCCCACCGGCAGGAACATACTTCAATAGGTCAGATGTTCAAAGAATTGGATTTCAATTAAGTAATCAAACTTACAAGCCACCCCCAGAGTTTGGACCATATTACTTCATTGCTTTTCCTTATGCTTTCCCAGAATCCCGGGGAGCAAATTCTCTAAGCAAGCCTGTGGTCATTGGGATAGCAGTTGGCTGCTCACTTCTGGTTTTGAGCCTGGTAGGGCTAGGGATATATGCCATTATACAAAAGAAACGCGCAGAGAAAGCCATTGTGCTAAGCAGGCCTTTCGCATCATGGACACCTAGCGGGAAGGATAGTGGAGGAGCTCCCCAACTAAAAGGAGCAAGATGGTTTTCTTATGATGAACTCAAAAAGTGCACCTCAAATTTCTCCCATAACAATGAGTTAGGATTTGGAGGTTATGGCAAGGTGTACAAAGGGGTGCTTCCTGATGGACAAATGGTTGCAATAAAACGAGCCCAACAGGGATCAATGCAAGGAGGACTTGAGTTCAAGACTGAAATTGAATTGCTTTCACGAGTTCATCACAAGAATCTTGTTGCTCTTGTAGGCTTCTGCTTTGAACAAGGAGAGCAAATGTTGGTCTATGAATATATTCCCAATGGAACACTCAGAGATTGTCTATGTGGGAGAGTTGGGATTTATCTAGACTGGAAGAGGAGGCTAAGAATTGCTCTTGGGTCAGCGAGAGGACTTGCTTACTTACATGAACTTGCTAACCCTCCCATAATTCATAGAGATGTCAAGTCCTCTAATATCTTGCTAGATGAGAATTTGACAGCAAAAGTTGCAGATTTTGGCTTATCAAAGTTAGCAACAGATAGTGGAAAAGGCCATGTTTCCACTCAGGTTAAAGGCACATTGGGATATCTTGATCCTGAATATTACATGACACAACAATTGACCGAGAAGAGTGATGTCTATAGTTTCGGGGTGGTGATGCTTGAACTCATAACCGGGAGGCAACCTATTGAGAAAGGAAAGTACATTGTGCGTGAAGTGAGATCCCTGATAAACAAGAATGATCAAGAGTACTGTGGTTTAAGGGAACTTGTGGATCCAGTGGTTATGGAAACTTGTAATCTTGGTGGGTTCCGTACATTCTTGGATCTCTCAATGCAATGTGTTGAGGAATCAGCTAGAGATCGTCCCACAATGAGTGAAGTTGTGAAAGCTCTTGAGATCGTTCTGCAAAATGATGGCTTGAACACAAATTCCACTTCTGCTTCCTCTTCTGCAACAGACTTTGCACTTTCTAAGACTTCTCTCACGCATCCTTATATGGATACTTTCAGCAGAAAGGACACTAATGAGACCAATGCTTTTGACTACAGTGGTGGCTACTCACTTCCTGCAAAAATTGAGCCTAAATAG	2895	0.4183	MAMILRTLLFLGFWSVQIHLIFSFTDPQDVAVLRSLKDMWENTPPSWDKSDDPCGAPWEGVTCNRSRVTSLGLSTMGLQGKLSGDIGGLTELRSLDLSFNRGLKGPLSPKLGDLRNLNILILAGCSFSGKIPDELGNLSELSFLALNSNNLSGGIPASLGNLSKLYWLDLADNQISGPIPVSTSTSPGLDMLLKAKHFHFNKNQLSGPISPNLFSSQMVLIHVLFDGNRLTGTIPSTLGLVQTLEVLRLDRNLLVGEVPSNLNNLTNLNELNLAHNKLTGPLPDLSQMGTLNYVDLSNNVFDPSQPPNWFQTSPSLTTLIMEFGSLEGPLPSKLFSSPQIQQVKLKHNALNNTLDMGDIISPQLQLVDLQDNQITSVTLSSGYKNTLILIGNPVCLTALSNTNYCQLQQQPKKPYSTSLANCGSKSCPADQKLSPQSCECAYPYEGILYFRGPLFRELSNANTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPAGTYFNRSDVQRIGFQLSNQTYKPPPEFGPYYFIAFPYAFPESRGANSLSKPVVIGIAVGCSLLVLSLVGLGIYAIIQKKRAEKAIVLSRPFASWTPSGKDSGGAPQLKGARWFSYDELKKCTSNFSHNNELGFGGYGKVYKGVLPDGQMVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVALVGFCFEQGEQMLVYEYIPNGTLRDCLCGRVGIYLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLATDSGKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITGRQPIEKGKYIVREVRSLINKNDQEYCGLRELVDPVVMETCNLGGFRTFLDLSMQCVEESARDRPTMSEVVKALEIVLQNDGLNTNSTSASSSATDFALSKTSLTHPYMDTFSRKDTNETNAFDYSGGYSLPAKIEPK	964

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g01933	964	FunFam	Leucine-rich repeat family protein	28	184	-	-
	Accr1g01933	964	Gene3D	Transferase(Phosphotransferase) domain 1	706	924	-	-
	Accr1g01933	964	Gene3D	Ribonuclease Inhibitor	188	409	IPR032675	-
	Accr1g01933	964	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	750	762	IPR008271	GO:0004672\|GO:0006468
	Accr1g01933	964	ProSitePatterns	Protein kinases ATP-binding region signature.	636	658	IPR017441	GO:0005524
	Accr1g01933	964	CDD	STKc_IRAK	636	901	-	-
	Accr1g01933	964	SUPERFAMILY	L domain-like	41	405	-	-
	Accr1g01933	964	Gene3D	Phosphorylase Kinase; domain 1	604	705	-	-
	Accr1g01933	964	Pfam	Leucine rich repeat N-terminal domain	27	64	IPR013210	-
	Accr1g01933	964	SUPERFAMILY	Protein kinase-like (PK-like)	615	925	IPR011009	-
	Accr1g01933	964	Pfam	Protein tyrosine and serine/threonine kinase	633	900	IPR001245	GO:0004672\|GO:0006468
	Accr1g01933	964	SMART	serkin_6	630	903	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01933	964	ProSiteProfiles	Protein kinase domain profile.	630	904	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01933	964	FunFam	Predicted protein	187	408	-	-
	Accr1g01933	964	FunFam	Leucine-rich repeat protein kinase family protein	598	705	-	-
	Accr1g01933	964	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	706	916	-	-
	Accr1g01933	964	Gene3D	Ribonuclease Inhibitor	29	187	IPR032675	-
	Accr1g01933	964	PANTHER	RECEPTOR-LIKE PROTEIN 55	34	904	-	-
	Accr1g01933	964	ProSiteProfiles	Leucine-rich repeat profile.	267	289	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g01933	Accr-Chr1	49907807	49915357	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g01933	6	964	Receptor kinase-like Gene Family	AT1G79620	71.255	0.0	1425

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Accr1g01933		PK_Tyr_Ser-Thr	3.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g01933	-		-	gmx:100792249	1544.25