Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01917 ATGTCTCTCTCCGACGCTGGTCCGGTTCCTGCTCCGTCGTTGTCCACAACTCCGAGCAGCAGCCCCGGCCAGAAGCAGCATTGTCGAAGCAAACGGAAGAAACGACTCGGCGTCGTCATCGACCACAAGGTGTCTTTCAAGCCCAAATACGCCAAGCAACCGCACCACCACCCTGACGCGGCGGCGTCGCCGATGATCCCCCGGCCATGCACTGAGTGCGGGAAGAAGTTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGTCATCCCGAACGCCAATGGCGCGGAATCAACCCGCCCCCAAATCTCCAACGACAACCACCACCACCACCTGATAACCAAACGCCGGTGGAATTATTGATGACCGCAGAAGACCACGAGATCGCGGCGGGTCTTTTGCTGCTGGCGAACTCGGAGGGGCCGGTGGCGGGCGGAGGACCGTCGACGACGCGGTTCGAGTGCTCGAGTTGCAAGAAGGTGTTCAGTTCACGGCAGGCTCTGGGAGGGCACAGGGCAAGCCACAAAAACGTGAAGGGGTGCTTCGCGAACGAAGAAGACGAGGAGATGACGTCAGCGGCTATGATGGTTCTAGAAGGGCACAAGTGCGGGATATGCCTGAGGGTGTTTTCGAGTGGGCAAGCGCTGGGTGGTCACATGAGGTGTCACTGGGACAAAGGTGACCCTGAACCCAACCTCTTTCATCATCATCAAGGATTTGGGCTTGACTTGAATTTGCCTCCACCTACGCTTCCACATGATTCATCTTCCTCCTCTCCTATCACTCTGGATTTGAGATTGGGACTTTAG 810 0.5753 MSLSDAGPVPAPSLSTTPSSSPGQKQHCRSKRKKRLGVVIDHKVSFKPKYAKQPHHHPDAAASPMIPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLQRQPPPPPDNQTPVELLMTAEDHEIAAGLLLLANSEGPVAGGGPSTTRFECSSCKKVFSSRQALGGHRASHKNVKGCFANEEDEEMTSAAMMVLEGHKCGICLRVFSSGQALGGHMRCHWDKGDPEPNLFHHHQGFGLDLNLPPPTLPHDSSSSSPITLDLRLGL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01917 269 Pfam C2H2-type zinc finger 201 226 - -
Accr1g01917 269 Pfam C2H2-type zinc finger 69 92 - -
Accr1g01917 269 Pfam C2H2-type zinc finger 152 176 - -
Accr1g01917 269 MobiDBLite consensus disorder prediction 9 25 - -
Accr1g01917 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 223 IPR013087 -
Accr1g01917 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Accr1g01917 269 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 38 269 - -
Accr1g01917 269 SUPERFAMILY beta-beta-alpha zinc fingers 201 226 IPR036236 -
Accr1g01917 269 SMART c2h2final6 68 90 IPR013087 -
Accr1g01917 269 SMART c2h2final6 153 175 IPR013087 -
Accr1g01917 269 SMART c2h2final6 201 223 IPR013087 -
Accr1g01917 269 SUPERFAMILY beta-beta-alpha zinc fingers 68 175 IPR036236 -
Accr1g01917 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Accr1g01917 269 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Accr1g01917 269 MobiDBLite consensus disorder prediction 245 269 - -
Accr1g01917 269 MobiDBLite consensus disorder prediction 1 36 - -
Accr1g01917 269 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Accr1g01917 269 MobiDBLite consensus disorder prediction 95 114 - -
Accr1g01917 269 Gene3D Classic Zinc Finger 150 223 - -
Accr1g01917 269 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01917 Accr-Chr1 49659950 49660759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01917 50 269 C2H2 Transcription Factor Family AT4G35280 55.000 3.41e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g01917 zf-C2H2_6 4.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01917 - - jcu:105641786 249.98