Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01900 ATGCGATTTCTTATCTCCAAACAAACACAATTTCATTCTTCTTCCCCCAGTCATTTAATCAGTCATCATCAGCCACTACCACCAAACTCGCAAATGGAGGCTCTGCTTCTTAGTAAACCTGCTCCCCACTTCAAATTTTCTTCCAAGCATAAACATTCTTCACCTCTTTTCACTTTTCCCACACAATCTCTTCGCCTCCAACCACTCAACACCACCTCATTCACCTTCCGCGCCATTCAAAATCAAGGACAGCAAATTTTCCAGGACACTCCTGCTCCCATCGACAACCAAGATGAATCCTACGGCGAAGTTAAAGGTATTATCGGAAGCAGAGCCCTTGAAGGCGGCAAAGGCATGGAGTATTTGATCGAATGGAAAGATGGCCATGAACCCTCCTGGGTGCCCTCCGATTTTATCGCCAAAGATGTGGTGGCCGAGTACGAGACTCCGTGGTGGACCGCGGCAAAGAAAGCAGACGAATCAGCTCTCAAGCAGCTCATCGATGCCGACGACGACAGGGATATCGATGCCGTGGACAGCGACGGGCGAACCGCACTCCTGTTCGTATCGGGTCTAGGGTCGGAGCCGTGCGTGAAGGCGCTAGCCGAAGCGGGCGCAAATCTGGATCATCGAGAAAACTCGGGGGGACTAACGGCGCTTCACATGGCGGCCGGATACGTGAGGCCCGGCGTGGTGAAACTTCTGGTAGATCTGGGGGCGGACGTGGAGGCAGAAGACGACAGAGGACGGACGCCGTTAGATTTAGCAAAGGAAATTCTGAATGCAACACCGAAAGGGAATCCGATGCAGTTTGGGAGGAGGATTGGATTAGACAGCGTGATACGATCTCTGGAGGGGGCGATATACGAGTATGCGGAGGTGGAGTGGATATTGGAGAAGAGAGGGAAGGGGGAGAACTTGGAGTATTTGGTAAAATGGAAAGACGGGGGAGAGAACGAGTGGGTGAAGGCCAAGTTCATTGGAGAGGATGTGGTGAGAGATTACGAAGCCGGACTCGAGTACGCGGTGGCGGAGAGAGTGATGGGAAGAAGAGACGGGGACGATGGGAAACCAGAGTTTCTGGTGAAATGGGCCGACATGGAGCAGCCGACTTGGGAGCCCAAAGAGAATGTGGATCCTCAGCTCATACAGGAATATGAAGAGGCCCAAAACACTAGCCCACCGTAA 1188 0.5227 MRFLISKQTQFHSSSPSHLISHHQPLPPNSQMEALLLSKPAPHFKFSSKHKHSSPLFTFPTQSLRLQPLNTTSFTFRAIQNQGQQIFQDTPAPIDNQDESYGEVKGIIGSRALEGGKGMEYLIEWKDGHEPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKQLIDADDDRDIDAVDSDGRTALLFVSGLGSEPCVKALAEAGANLDHRENSGGLTALHMAAGYVRPGVVKLLVDLGADVEAEDDRGRTPLDLAKEILNATPKGNPMQFGRRIGLDSVIRSLEGAIYEYAEVEWILEKRGKGENLEYLVKWKDGGENEWVKAKFIGEDVVRDYEAGLEYAVAERVMGRRDGDDGKPEFLVKWADMEQPTWEPKENVDPQLIQEYEEAQNTSPP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01900 395 Pfam Chromo (CHRromatin Organisation MOdifier) domain 344 388 IPR023780 -
Accr1g01900 395 ProSiteProfiles Ankyrin repeat profile. 215 247 IPR002110 GO:0005515
Accr1g01900 395 SUPERFAMILY Ankyrin repeat 146 258 IPR036770 -
Accr1g01900 395 Pfam Ankyrin repeats (many copies) 201 256 IPR002110 GO:0005515
Accr1g01900 395 CDD CD2_cpSRP43_like 100 149 - -
Accr1g01900 395 PANTHER MYOTROPHIN 92 313 - -
Accr1g01900 395 SUPERFAMILY Chromo domain-like 340 389 IPR016197 -
Accr1g01900 395 SUPERFAMILY Chromo domain-like 290 337 IPR016197 -
Accr1g01900 395 Gene3D - 338 390 - -
Accr1g01900 395 Gene3D - 146 287 IPR036770 -
Accr1g01900 395 SMART ANK_2a 146 175 IPR002110 GO:0005515
Accr1g01900 395 SMART ANK_2a 215 244 IPR002110 GO:0005515
Accr1g01900 395 SMART ANK_2a 181 210 IPR002110 GO:0005515
Accr1g01900 395 Gene3D - 97 145 - -
Accr1g01900 395 Gene3D - 288 337 - -
Accr1g01900 395 SMART chromo_7 290 340 IPR000953 -
Accr1g01900 395 SMART chromo_7 100 152 IPR000953 -
Accr1g01900 395 SMART chromo_7 341 391 IPR000953 -
Accr1g01900 395 MobiDBLite consensus disorder prediction 1 26 - -
Accr1g01900 395 SUPERFAMILY Chromo domain-like 98 151 IPR016197 -
Accr1g01900 395 ProSiteProfiles Chromo and chromo shadow domain profile. 342 395 IPR000953 -
Accr1g01900 395 MobiDBLite consensus disorder prediction 6 26 - -
Accr1g01900 395 ProSiteProfiles Chromo and chromo shadow domain profile. 292 321 IPR000953 -
Accr1g01900 395 CDD CD2_cpSRP43_like 290 337 - -
Accr1g01900 395 CDD CD3_cpSRP43_like 339 387 IPR030300 -
Accr1g01900 395 ProSiteProfiles Ankyrin repeat region circular profile. 215 247 - -
Accr1g01900 395 MobiDBLite consensus disorder prediction 371 395 - -
Accr1g01900 395 ProSiteProfiles Ankyrin repeat profile. 181 213 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01900 176 256 CAMTA Transcription Factor Family AT5G09410 39.080 4.88e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01900 K12271 - gmx:100818382 500.745