Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01875 ATGAACATCATCACGCAAAGCCTGTCCGAGAGACTGAGGCCCCTTGTGGGGTTGAATGGCTGGGACTACTGTGTTCACTGGGAACTAAGCCAAGACCAAAGGTTTCTTGAATGGCTGGGATGCTCTTGTGCTGGAACTGAAGGTAGCCAAAATGGTGGAGAAGAACTTCTTTTCCCTGTTTCTTCAGCTGCTCCATGCAGAGATACAATGTTTCCTCATCCCAGTACAAAGTCCTGTGATTTACTATCCCAACTTCCCACTTCGATAACCTTAGATTCTGGGATTCATGCAGAGACACTATTATCCAATCAGCCCAATTGGTTGAACTATTCCAATAGCTTAGACCCAAACACTTTGGAAGAAACAACTGGGACCCATGTTTTGATTCCCGTGCCTGGGGGACTAATTGAGCTGTTTGTCACAAAGCAAGTGCAGGAAGATCAACAGGTAGTCGATTTCGTCACAGCCCACAGCGATATGTTTATGAGCTTCGACATTGACGTTAATTCAATCAGTCATACGCAACCAAATATGAATCCTCTTTTAGGGGATGAGAATGATGGGAATACAATAGCATCAGAGACTTCAAGTCTTCCCCCACATGATCAATGCAATTCACCACTGAACTTGATGCAGCAATATAGCTACAATAGCAACCCAAATAACAGAATGAAAAGTGACGGAATTTTTGGAGATTCCCAAGGTTCATTCCTATTGAACAAAAGCCAACAACTTGGGGAGCCAATGGAGAAGAAGGATCAGCAAGGGGACGACAAGGATTTGAACAAACACTTGGTGGGCAGGTCAGATTCGATGTCGGATTGCAGCGATCAGAACGAAGACGATGATGATGGGAAGTACAGGCGAAGGAATGGGAAAGGGAATCAATCGAAGAATCTTCTGGCAGAGAGAAGGAGGAGGAAGAAGCTGAACGATAGCTTGTATAATCTTCGGTCTTTGGTTCCCAGAATTTCCAAGCTGGACAGAGCATCGATTCTTGGGGACGCAATTGAGTACGTGAAGGATTTGCAGAAGCAAGTGAAAGAACTGCAAGATGAGCTCGAGGAACATTCAGAAATGGATGAACAACAAGCACTGCCAGATAATGTTGTTGGGGTTGAAATGGGACCAGAAGCCGACCAAATGAAAACCCAAAATGGGTTTCATGTGGGGAAATCAGGGAACGACTATATGTGTAGGCAAAAACAAGAGTTTGATACTCCAAACGACAAACAAACACAACATATGGAGCCACAAGTGGAAGTGGCAGTGATAGAAGCGAATGAAATGTATGTTAAGGTGTTCTGTGAACACAGACCTGGTGGGTTCGTGAAACTGATGGAAGCATTCTATGCTCTGGGCTTCGAAGTCATCCATGCAACCGTCACCAGCCACAAAGGCCTGGTCTCCAATGTTTTCAAAGTAGAGAAGAAGGAGGATGAAATGGTAAAAGCTGAAGAGGCGAGGGAGTCACTGATGGAACTTATGAGGAATCCATGTAGAGGGTGGAATCATCATGAGATGAGCACAAGTGTGGCATCAGAGAATGGAGTGGCAATAAGGGACTATCATCATCAGCAAGAGCAGCAACAACAGCTTCATAATCTTCACAACCACCACATGGCTGCTGCTTATAACCCCCACCATTTACACCACATTCATACTTGA 1668 0.4484 MNIITQSLSERLRPLVGLNGWDYCVHWELSQDQRFLEWLGCSCAGTEGSQNGGEELLFPVSSAAPCRDTMFPHPSTKSCDLLSQLPTSITLDSGIHAETLLSNQPNWLNYSNSLDPNTLEETTGTHVLIPVPGGLIELFVTKQVQEDQQVVDFVTAHSDMFMSFDIDVNSISHTQPNMNPLLGDENDGNTIASETSSLPPHDQCNSPLNLMQQYSYNSNPNNRMKSDGIFGDSQGSFLLNKSQQLGEPMEKKDQQGDDKDLNKHLVGRSDSMSDCSDQNEDDDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEEHSEMDEQQALPDNVVGVEMGPEADQMKTQNGFHVGKSGNDYMCRQKQEFDTPNDKQTQHMEPQVEVAVIEANEMYVKVFCEHRPGGFVKLMEAFYALGFEVIHATVTSHKGLVSNVFKVEKKEDEMVKAEEARESLMELMRNPCRGWNHHEMSTSVASENGVAIRDYHHQQEQQQQLHNLHNHHMAAAYNPHHLHHIHT 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01875 555 SMART finulus 300 349 IPR011598 GO:0046983
Accr1g01875 555 MobiDBLite consensus disorder prediction 246 267 - -
Accr1g01875 555 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 155 IPR025610 -
Accr1g01875 555 Coils Coil 475 498 - -
Accr1g01875 555 Pfam Helix-loop-helix DNA-binding domain 301 344 IPR011598 GO:0046983
Accr1g01875 555 CDD bHLH_AtAMS_like 297 361 - -
Accr1g01875 555 MobiDBLite consensus disorder prediction 246 305 - -
Accr1g01875 555 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Accr1g01875 555 CDD ACT_UUR-ACR-like 432 496 - -
Accr1g01875 555 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 358 IPR036638 GO:0046983
Accr1g01875 555 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 142 494 - -
Accr1g01875 555 Gene3D - 283 359 IPR036638 GO:0046983
Accr1g01875 555 Coils Coil 333 363 - -
Accr1g01875 555 MobiDBLite consensus disorder prediction 175 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01875 Accr-Chr1 49252574 49254979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01875 6 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.499 6.28e-148 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g01875 bHLH-MYC_N 6e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01875 - - gmx:100798282 636.336