LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g01802	ATGTCCGAGTCACCTCGTCCCGATATGGACGAGTCTGTAACAGTGACGAAGACCGTACCAGGTTCCGAGGTGTCGGGAGAGCAGCAACCTTCGTCCAACTCGAATGGGTTAACTCAGCAAACGCCGGAGCAACTCGTGGCCAGAGCCATAGCTCCTGTGAAGGTGGAGTTCCTTCGTCCTCCTCCTGCTAGAACTTCCTCCACAACCCAGGCTGAAGATGTTTCTGAAGACAAGGATAAGGCCTCTGTTCAATCCGGTGGATTGTTGAAGGAGAAGAAGTCGAAGCGCCAACTCAAGCGTGAACGCCGTCAGAAGTCTGCTAAAAACATTTGTCCGGAAGTTGCAAAGACAGGAGATATTAGTTCATGTCCTTACAAAGACAAATGCCGCTTCAGCCATGACTTTGAAGCCTTCAAGGCTCAGAAACCGACTGATTTAGAGGGAGAATGCCCTGTTTTTAAAGCTGAAGGTTCATGCCCCTATGGGTTAGCATGTAGGTTTTCCAGCACGCATACAGAAGACATGCCTTCTGGCAATTTCAATGGTCGGAGGAAAACTTCCGAAATTAATGGACTGAGTAAAGATGTGCAAAAGCTTTTATGGAAAAATAAGATGCGCTTCCCCAAGGCAGATGCCAGTCTCAGAGCTCTTGGACTCTGGGAATCATCTAAGTTAAAGCGAAATGACTTAGAAGATAAGGAGGGTGGCAACATTGATTCAAATAATTGCCACAATGCTGATAATAATGGCTGTTGTGAAGTTTCAAATGACTTGGGTTCTAACTTAGAAAGCTCTGCTGAGGACTCAAAAGTTGATGGTACGTGTGTTACTGACCAAAACATTGGAAAAAGCTGCATACAAGCTGAACTTGATGTAGTAAGTGATGTCATACCCCCTGAAACTGATCAAAGCATGAAGCTACACCCACGAGAAAAGAAGCTTATTGATTTTAGAGATAAGTTGTATCTTGCGCCCTTGACCACTGTTGGGAATCTCCCATTCAGGAGGGTTTGCAAAGTGTTAGGCACTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGCGTGCAAATATGTGGGGCATATCCAGACACTATTGCACGAACCGTAGAACTGATAGAGCAGGAATGTGCAATAGATTTTATTGATATAAATATGGGTTGCCCAATAGATATTGTTGTGAATAAGGGTGCTGGGTCAGCTCTTCTCACGAAACCAATGCGGATGAAAAATATTGTAGGGGTAGCTTCAGGCACAGTGGAGAAACCTATAACTGTCAAGGTACGGACAGCTTATTTTGAAGGGAAAAATCGTGTTGATTCTATTATTGCAGACATGGGTTCTTGGGGAGCTAATGCGGTAACAATACATGGTAGATCACGTCAACAACGATACAGCAAGCTTGCTGACTGGGACTATGTCTATCAATGTGCCAGGAAGGCCCCTAATACTTTGCAAGTAGTAGGGAATGGAGATATTTTTTCTTTTGTTGACTGGAACAACCACAAGGCTGAATGCTCTGAGCTTGCTACATGCATGATTGCTCGTGGAGCTCTGATTAAGCCTTGGATATTTACAGAAATCAAGGAACAAAGGCACTGGGACATTAGCTCTGGGGAGCGATTTAATATTTTGAAAGATTTTGTACATTTTGGCCTCGAACACTGGGGTTCTGATACAAAAGGAGTGGAGACGACCAGGCGGTTTTTATTGGAATGGCTTAGCTACACATTTAGATATATACCTGTTGGCCTTTTAGATGTTATTTCACAAAGACTGAACTGGCGTCCGCCCTCTTACTACGGACGCGACGACCTTGAGACTCTAATGGCTTCAGACTCTGCCGCTGACTGGATACGAATAGCAGAGATGTTACTTGGCAAGGTTCCAGACGGCTTTTCTTTTACGCCAAAGCATAAATCAAATGCGTACGATAGTGCTCAGAATGGCTGA	2019	0.4443	MSESPRPDMDESVTVTKTVPGSEVSGEQQPSSNSNGLTQQTPEQLVARAIAPVKVEFLRPPPARTSSTTQAEDVSEDKDKASVQSGGLLKEKKSKRQLKRERRQKSAKNICPEVAKTGDISSCPYKDKCRFSHDFEAFKAQKPTDLEGECPVFKAEGSCPYGLACRFSSTHTEDMPSGNFNGRRKTSEINGLSKDVQKLLWKNKMRFPKADASLRALGLWESSKLKRNDLEDKEGGNIDSNNCHNADNNGCCEVSNDLGSNLESSAEDSKVDGTCVTDQNIGKSCIQAELDVVSDVIPPETDQSMKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGTDVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTIARTVELIEQECAIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVGVASGTVEKPITVKVRTAYFEGKNRVDSIIADMGSWGANAVTIHGRSRQQRYSKLADWDYVYQCARKAPNTLQVVGNGDIFSFVDWNNHKAECSELATCMIARGALIKPWIFTEIKEQRHWDISSGERFNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVISQRLNWRPPSYYGRDDLETLMASDSAADWIRIAEMLLGKVPDGFSFTPKHKSNAYDSAQNG	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g01802	672	PANTHER	TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE	40	666	-	-
	Accr1g01802	672	ProSitePatterns	Uncharacterized protein family UPF0034 signature.	404	422	IPR018517	GO:0008033\|GO:0017150\|GO:0050660
	Accr1g01802	672	Gene3D	-	100	181	-	-
	Accr1g01802	672	FunFam	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	101	180	-	-
	Accr1g01802	672	ProSiteProfiles	Zinc finger C3H1-type profile.	105	136	IPR000571	GO:0046872
	Accr1g01802	672	SMART	c3hfinal6	146	173	IPR000571	GO:0046872
	Accr1g01802	672	SMART	c3hfinal6	106	135	IPR000571	GO:0046872
	Accr1g01802	672	Pfam	Dihydrouridine synthase (Dus)	323	557	IPR035587	-
	Accr1g01802	672	Gene3D	Aldolase class I	316	558	IPR013785	-
	Accr1g01802	672	CDD	DUS_like_FMN	320	555	IPR035587	-
	Accr1g01802	672	MobiDBLite	consensus disorder prediction	1	109	-	-
	Accr1g01802	672	ProSiteProfiles	Zinc finger C3H1-type profile.	149	174	IPR000571	GO:0046872
	Accr1g01802	672	MobiDBLite	consensus disorder prediction	71	94	-	-
	Accr1g01802	672	MobiDBLite	consensus disorder prediction	7	45	-	-
	Accr1g01802	672	FunFam	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	316	558	-	-
	Accr1g01802	672	SUPERFAMILY	FMN-linked oxidoreductases	320	633	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g01802	Accr-Chr1	48368358	48372990	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Accr1g01802		Dus	1.3e-49	CL0036

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g01802	K05544		-	gmx:100783494	1024.62