Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01801 ATGTCCGAGTCACCTCGTCCCGATATGGACGAGTCTGTAACAGTGACGAAGACCGTACCAGGTTCCGAGGTGTCGGGAGAGCAGCAACCTTCGTCCAACTCGAATGGGTTAACTCAGCAAACGCCGGAGCAACTCGTGGCCAGAGCCATAGCTCCTGTGAAGGTGGAGTTCCTTCGTCCTCCTCCTGCTAGAACTTCCTCCACAACCCAGGCTGAAGATGTTTCTGAAGACAAGGATAAGGCCTCTGTTCAATCCGGTGGATTGTTGAAGGAGAAGAAGTCGAAGCGCCAACTCAAGCGTGAACGCCGTCAGGAACAGAAGTCTGCTAAAAACATTTGTCCGGAAGTTGCAAAGACAGGAGATATTAGTTCATGTCCTTACAAAGACAAATGCCGCTTCAGCCATGACTTTGAAGCCTTCAAGGCTCAGAAACCGACTGATTTAGAGGGAGAATGCCCTGTTTTTAAAGCTGAAGGTTCATGCCCCTATGGGTTAGCATGTAGGTTTTCCAGCACGCATACAGAAGACATGCCTTCTGGCAATTTCAATGGTCGGAGGAAAACTTCCGAAATTAATGGACTGAGTAAAGATGTGCAAAAGCTTTTATGGAAAAATAAGATGCGCTTCCCCAAGGCAGATGCCAGTCTCAGAGCTCTTGGACTCTGGGAATCATCTAAGTTAAAGCGAAATGACTTAGAAGATAAGGAGGGTGGCAACATTGATTCAAATAATTGCCACAATGCTGATAATAATGGCTGTTGTGAAGTTTCAAATGACTTGGGTTCTAACTTAGAAAGCTCTGCTGAGGACTCAAAAGTTGATGGTATTGATGGAAATTTAGATTCTGGTTCACCTTGCCCTCAAAAGAGAAGAAAAACTGAAGAAAATTCTGGCCTTAATGTGGAAGAAAATGAGGGTACGTGTGTTACTGACCAAAACATTGGAAAAAGCTGCATACAAGCTGAACTTGATGTAGTAAGTGATGTCATACCCCCTGAAACTGATCAAAGCATGAAGCTACACCCACGAGAAAAGAAGCTTATTGATTTTAGAGATAAGTTGTATCTTGCGCCCTTGACCACTGTTGGGAATCTCCCATTCAGGAGGGTTTGCAAAGTGTTAGGCACTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGCGTGCAAATATGTGGGGCATATCCAGACACTATTGCACGAACCGTAGAACTGATAGAGCAGGAATGTGCAATAGATTTTATTGATATAAATATGGGTTGCCCAATAGATATTGTTGTGAATAAGGGTGCTGGGTCAGCTCTTCTCACGAAACCAATGCGGATGAAAAATATTGTAGGGGTAGCTTCAGGCACAGTGGAGAAACCTATAACTGTCAAGGTACGGACAGCTTATTTTGAAGGGAAAAATCGTGTTGATTCTATTATTGCAGACATGGGTTCTTGGGGAGCTAATGCGGTAACAATACATGGTAGATCACGTCAACAACGATACAGCAAGCTTGCTGACTGGGACTATGTCTATCAATGTGCCAGGAAGGCCCCTAATACTTTGCAAGTAGTAGGGAATGGAGATATTTTTTCTTTTGTTGACTGGAACAACCACAAGGCTGAATGCTCTGAGCTTGCTACATGCATGATTGCTCGTGGAGCTCTGATTAAGCCTTGGATATTTACAGAAATCAAGGAACAAAGGCACTGGGACATTAGCTCTGGGGAGCGATTTAATATTTTGAAAGATTTTGTACATTTTGGCCTCGAACACTGGGGTTCTGATACAAAAGGAGTGGAGACGACCAGGCGGTTTTTATTGGAATGGCTTAGCTACACATTTAGATATATACCTGTTGGCCTTTTAGATGTTATTTCACAAAGACTGAACTGGCGTCCGCCCTCTTACTACGGACGCGACGACCTTGAGACTCTAATGGCTTCAGACTCTGCCGCTGACTGGATACGAATAGCAGAGATGTTACTTGGCAAGGTTCCAGACGGCTTTTCTTTTACGCCAAAGCATAAATCAAATGCGTACGATAGTGCTCAGAATGGCTGA 2118 0.441 MSESPRPDMDESVTVTKTVPGSEVSGEQQPSSNSNGLTQQTPEQLVARAIAPVKVEFLRPPPARTSSTTQAEDVSEDKDKASVQSGGLLKEKKSKRQLKRERRQEQKSAKNICPEVAKTGDISSCPYKDKCRFSHDFEAFKAQKPTDLEGECPVFKAEGSCPYGLACRFSSTHTEDMPSGNFNGRRKTSEINGLSKDVQKLLWKNKMRFPKADASLRALGLWESSKLKRNDLEDKEGGNIDSNNCHNADNNGCCEVSNDLGSNLESSAEDSKVDGIDGNLDSGSPCPQKRRKTEENSGLNVEENEGTCVTDQNIGKSCIQAELDVVSDVIPPETDQSMKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGTDVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTIARTVELIEQECAIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVGVASGTVEKPITVKVRTAYFEGKNRVDSIIADMGSWGANAVTIHGRSRQQRYSKLADWDYVYQCARKAPNTLQVVGNGDIFSFVDWNNHKAECSELATCMIARGALIKPWIFTEIKEQRHWDISSGERFNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVISQRLNWRPPSYYGRDDLETLMASDSAADWIRIAEMLLGKVPDGFSFTPKHKSNAYDSAQNG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01801 705 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 40 699 - -
Accr1g01801 705 SUPERFAMILY FMN-linked oxidoreductases 353 666 - -
Accr1g01801 705 ProSiteProfiles Zinc finger C3H1-type profile. 107 138 IPR000571 GO:0046872
Accr1g01801 705 ProSiteProfiles Zinc finger C3H1-type profile. 151 176 IPR000571 GO:0046872
Accr1g01801 705 Gene3D Aldolase class I 349 591 IPR013785 -
Accr1g01801 705 Coils Coil 88 108 - -
Accr1g01801 705 SMART c3hfinal6 108 137 IPR000571 GO:0046872
Accr1g01801 705 SMART c3hfinal6 148 175 IPR000571 GO:0046872
Accr1g01801 705 Pfam Dihydrouridine synthase (Dus) 356 590 IPR035587 -
Accr1g01801 705 CDD DUS_like_FMN 353 588 IPR035587 -
Accr1g01801 705 ProSitePatterns Uncharacterized protein family UPF0034 signature. 437 455 IPR018517 GO:0008033|GO:0017150|GO:0050660
Accr1g01801 705 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 349 591 - -
Accr1g01801 705 MobiDBLite consensus disorder prediction 1 112 - -
Accr1g01801 705 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 103 182 - -
Accr1g01801 705 Gene3D - 102 182 - -
Accr1g01801 705 MobiDBLite consensus disorder prediction 71 94 - -
Accr1g01801 705 MobiDBLite consensus disorder prediction 7 45 - -
Accr1g01801 705 MobiDBLite consensus disorder prediction 264 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01801 Accr-Chr1 48368358 48372990 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr1g01801 Dus 1.5e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01801 K05544 - gmx:100783494 1052.74