Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01782 ATGAAGATCCAATGTGATGTGTGTGAGAAAATGGAAGCTTCAGTGTTCTGTGTTGCAGACGAAGCTGCTCTCTGCCATGGATGTGATTCAAGTATCCACCACGCCAACAAGCTCGCTGGCAAACACACACGCTTCTCTCTTCACCACCCCACCTCTAAAGATTCACCTCTCTGTGATATCTGCCAAGAGAAGCGAGCATATGTTTTCTGCAAAGAAGACAGAGCAATACTATGTAGAGACTGTGACCTTAACATCCACATAGCCAATGAACACACCCAGAAACACGACAGGTTTCTTCTCACAGGCGTCAAGTTTTCTGATTCTTCTTCTTCTCCTGGGGACCCATCTTCATCTTCCTGCAATAATGCCATAACCACTGGACATAAAAGGGTCGATAATAATAATAATGAACGTCGTGAAGCAAGAAGATCGAGTCGGAACAATGATTCTAACACAATGAACAGAGCCAGATGGGATAACAATAATGAGAATTTCAGTTCTTCTGTGAATTCGGATACTATGGTTAGTGACACAGAAGCAGTTTCTGCGAGCAGCTTTTCTGAGTATTTGATTGAGACGATACCTGGGTTTTGCTTCGAAGACCTGATTGATGATTCGTTCCCACCTCACTGTAAGAATGATCAGGATGAGCATGAAACTACATTTGATGATTAA 675 0.4281 MKIQCDVCEKMEASVFCVADEAALCHGCDSSIHHANKLAGKHTRFSLHHPTSKDSPLCDICQEKRAYVFCKEDRAILCRDCDLNIHIANEHTQKHDRFLLTGVKFSDSSSSPGDPSSSSCNNAITTGHKRVDNNNNERREARRSSRNNDSNTMNRARWDNNNENFSSSVNSDTMVSDTEAVSASSFSEYLIETIPGFCFEDLIDDSFPPHCKNDQDEHETTFDD 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01782 224 MobiDBLite consensus disorder prediction 147 174 - -
Accr1g01782 224 CDD Bbox1_BBX-like 5 47 - -
Accr1g01782 224 Gene3D Classic Zinc Finger 1 99 - -
Accr1g01782 224 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 206 - -
Accr1g01782 224 MobiDBLite consensus disorder prediction 131 146 - -
Accr1g01782 224 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Accr1g01782 224 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Accr1g01782 224 SMART bboxneu5 53 100 IPR000315 GO:0008270
Accr1g01782 224 SMART bboxneu5 4 47 IPR000315 GO:0008270
Accr1g01782 224 MobiDBLite consensus disorder prediction 108 174 - -
Accr1g01782 224 CDD Bbox1_BBX-like 57 100 - -
Accr1g01782 224 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Accr1g01782 224 MobiDBLite consensus disorder prediction 108 130 - -
Accr1g01782 224 FunFam B-box zinc finger protein 21 1 98 - -
Accr1g01782 224 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01782 Accr-Chr1 48016839 48018275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01782 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 48.826 1.80e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Accr1g01782 zf-B_box 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01782 - - gmx:100786372 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g01782 1 48016839 48018275 Accr1g01782 1 48016839 48018275 ECH
Accr1g01782 1 48016839 48018275 Accr9g00135 9 1544192 1546272 ECH